Variant report

Variant	rs12692451
Chromosome Location	chr2:12147336-12147337
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-LPIN1-1	chr2:12147242-12147353	ENSG00000224184
2	lnc-LPIN1-1	chr2:12147254-12147353	ENSG00000224184
3	lnc-LPIN1-1	chr2:12147300-12147353	ENSG00000224184
4	lnc-LPIN1-1	chr2:12147242-12147353	NR_110196
5	lnc-LPIN1-1	chr2:12147242-12147353	NR_110197
6	lnc-LPIN1-1	chr2:12147242-12147353	NR_110198

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10199352	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11897150	1.00[CHB][hapmap];1.00[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs12692450	1.00[CHB][hapmap];1.00[CHD][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs1371613	0.97[ASN][1000 genomes]
rs6727216	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9646725	0.97[ASN][1000 genomes]
rs966367	0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003899	chr2:11789374-12248081	Strong transcription Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:49 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:12137200-12148800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr2:12145000-12147400	Enhancers	Primary hematopoietic stem cells short term culture	blood
3	chr2:12145000-12147400	Bivalent Enhancer	Primary Natural Killer cells fromperipheralblood	blood
4	chr2:12145000-12147600	Enhancers	Primary T killer memory cells from peripheral blood	blood
5	chr2:12145000-12149800	Enhancers	Primary B cells from peripheral blood	blood
6	chr2:12145200-12147600	Enhancers	HUVEC	blood vessel
7	chr2:12145400-12147800	Enhancers	Cortex derived primary cultured neurospheres	brain
8	chr2:12145600-12147400	Enhancers	Fetal Lung	lung
9	chr2:12145600-12147400	Enhancers	Fetal Muscle Leg	muscle
10	chr2:12145600-12147600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr2:12145600-12147600	Enhancers	NH-A	brain
12	chr2:12145600-12147800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr2:12145600-12147800	Enhancers	HSMM	muscle
14	chr2:12145800-12147400	Enhancers	Fetal Heart	heart
15	chr2:12145800-12147400	Enhancers	HMEC	breast
16	chr2:12145800-12147400	Enhancers	Osteobl	bone
17	chr2:12145800-12148000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr2:12145800-12148000	Enhancers	HUES64 Cell Line	embryonic stem cell
19	chr2:12146000-12147400	Enhancers	Fetal Stomach	stomach
20	chr2:12146000-12147600	Enhancers	iPS-18 Cell Line	embryonic stem cell
21	chr2:12146000-12148000	Enhancers	Liver	Liver
22	chr2:12146200-12147400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
23	chr2:12146200-12147600	Enhancers	ES-I3 Cell Line	embryonic stem cell
24	chr2:12146200-12147600	Enhancers	iPS-15b Cell Line	embryonic stem cell
25	chr2:12146200-12147600	Enhancers	iPS-20b Cell Line	embryonic stem cell
26	chr2:12146200-12147800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
27	chr2:12146400-12147800	Enhancers	HUES6 Cell Line	embryonic stem cell
28	chr2:12146400-12148000	Enhancers	HUES48 Cell Line	embryonic stem cell
29	chr2:12146400-12148000	Weak transcription	NHLF	lung
30	chr2:12146400-12151000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
31	chr2:12146600-12147400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
32	chr2:12146600-12147400	Weak transcription	Fetal Brain Female	brain
33	chr2:12146600-12147600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr2:12146600-12148000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr2:12146600-12148800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
36	chr2:12146600-12148800	Enhancers	GM12878-XiMat	blood
37	chr2:12146600-12148800	Weak transcription	HSMMtube	muscle
38	chr2:12146600-12153600	Weak transcription	Primary monocytes fromperipheralblood	blood
39	chr2:12146800-12147400	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
40	chr2:12146800-12147400	Enhancers	Muscle Satellite Cultured Cells	--
41	chr2:12146800-12147600	Enhancers	ES-WA7 Cell Line	embryonic stem cell
42	chr2:12146800-12147800	Enhancers	HepG2	liver
43	chr2:12146800-12149000	Weak transcription	Primary B cells from cord blood	blood
44	chr2:12146800-12150800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
45	chr2:12147000-12148600	Weak transcription	Primary hematopoietic stem cells	blood
46	chr2:12147200-12147600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
47	chr2:12147200-12147800	Enhancers	K562	blood
48	chr2:12147200-12148200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
49	chr2:12147200-12148600	Weak transcription	NHEK	skin

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