Variant report

Variant	rs12695323
Chromosome Location	chr3:115940747-115940748
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10804521	0.85[CEU][hapmap]
rs10804522	0.85[CEU][hapmap]
rs12496701	0.85[CEU][hapmap]
rs12634908	0.81[ASN][1000 genomes]
rs13062139	0.81[ASN][1000 genomes]
rs13085102	0.81[ASN][1000 genomes]
rs1381067	0.94[CHB][hapmap];0.81[JPT][hapmap];0.81[ASN][1000 genomes]
rs1461135	0.94[CHB][hapmap];0.81[JPT][hapmap];0.80[MEX][hapmap]
rs1461136	0.94[CHB][hapmap];0.81[JPT][hapmap];0.80[MEX][hapmap]
rs1461137	0.94[CHB][hapmap];0.81[JPT][hapmap];0.80[MEX][hapmap]
rs1461138	0.85[CEU][hapmap]
rs1468002	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1882012	0.87[CHB][hapmap];0.93[JPT][hapmap]
rs1920366	0.93[CHB][hapmap];0.93[JPT][hapmap]
rs1920374	0.85[CHB][hapmap];0.93[JPT][hapmap]
rs1920376	0.87[CHB][hapmap];0.93[JPT][hapmap]
rs2169306	0.87[ASN][1000 genomes]
rs2902657	0.81[ASN][1000 genomes]
rs4146785	0.93[CHB][hapmap];0.93[JPT][hapmap]
rs4296590	0.94[CHB][hapmap];0.81[JPT][hapmap];0.80[MEX][hapmap]
rs4831124	0.88[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.95[LWK][hapmap];1.00[MEX][hapmap];0.85[MKK][hapmap];0.95[TSI][hapmap];0.96[YRI][hapmap]
rs6764630	0.93[CHB][hapmap];0.93[JPT][hapmap]
rs6768229	0.82[ASN][1000 genomes]
rs6784349	0.94[CHB][hapmap];0.80[JPT][hapmap]
rs6792741	0.94[CHB][hapmap];0.81[JPT][hapmap]
rs6795256	0.94[CHB][hapmap];0.80[MEX][hapmap];0.83[ASN][1000 genomes]
rs7614089	1.00[CEU][hapmap]
rs7641216	1.00[CHB][hapmap];0.93[JPT][hapmap];0.85[ASN][1000 genomes]
rs7641464	0.93[CHB][hapmap];0.93[JPT][hapmap];0.85[ASN][1000 genomes]
rs9289046	0.94[CHB][hapmap];0.81[JPT][hapmap];0.81[ASN][1000 genomes]
rs9289047	0.94[CHB][hapmap];0.81[JPT][hapmap];0.80[MEX][hapmap];0.81[ASN][1000 genomes]
rs9827410	0.93[CHB][hapmap];0.80[JPT][hapmap]
rs9834979	0.84[ASN][1000 genomes]
rs9844188	0.85[ASN][1000 genomes]
rs9851336	0.94[CHB][hapmap];0.81[JPT][hapmap];0.81[ASN][1000 genomes]
rs9872625	0.87[CHB][hapmap];0.81[JPT][hapmap]
rs9875465	0.93[CHB][hapmap]
rs9875743	0.93[CHB][hapmap];0.93[JPT][hapmap]
rs9878125	0.93[CHB][hapmap];0.93[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2755046	chr3:115818840-115942952	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
2	nsv877360	chr3:115916171-116023990	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links