Variant report

Variant	rs12697236
Chromosome Location	chr5:30210905-30210906
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10035906	0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10940876	0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12515411	0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13158406	0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13162168	0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4446473	0.89[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4867257	0.81[ASN][1000 genomes]
rs4867258	0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7706687	0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7721105	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv881635	chr5:30122190-30371238	Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv915858	chr5:30176470-31018294	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:30210800-30211000	Bivalent/Poised TSS	ES-UCSF4 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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