Variant report

Variant	rs12698652
Chromosome Location	chr7:67503308-67503309
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10250506	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12698655	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12698656	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12698659	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs13226076	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs13227421	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs13237882	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs34016808	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs34921289	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs35096572	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs35247802	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs35446850	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs35476078	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs35568593	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs71565157	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs71565158	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs71565160	0.92[EUR][1000 genomes]
rs71565161	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018756	chr7:67472370-67508145	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
2	nsv1018102	chr7:67494709-67526914	Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Weak transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:67503200-67504200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr7:67503200-67504400	Enhancers	HepG2	liver
3	chr7:67503200-67504800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr7:67503200-67504800	Flanking Active TSS	A549	lung

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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