Variant report

Variant	rs12699359
Chromosome Location	chr7:12324844-12324845
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:12319256..12322046-chr7:12323185..12326325,3	K562	blood:

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs1042946	0.85[EUR][1000 genomes]
rs10666459	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12699321	0.85[CEU][hapmap]
rs12699322	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs12699325	0.82[EUR][1000 genomes]
rs12699326	0.82[EUR][1000 genomes]
rs12699334	0.85[EUR][1000 genomes]
rs12699337	0.85[EUR][1000 genomes]
rs12699339	0.85[EUR][1000 genomes]
rs12699340	0.88[EUR][1000 genomes]
rs12699341	0.88[EUR][1000 genomes]
rs12699343	0.87[EUR][1000 genomes]
rs12699344	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12699347	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12699348	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12699351	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12699356	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12699357	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12699358	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12699361	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs13222858	0.87[EUR][1000 genomes]
rs13223216	0.82[EUR][1000 genomes]
rs13229277	0.80[EUR][1000 genomes]
rs13233991	0.82[EUR][1000 genomes]
rs13234238	0.85[CEU][hapmap];0.82[EUR][1000 genomes]
rs13244354	0.85[CEU][hapmap]
rs13245483	0.80[EUR][1000 genomes]
rs13246340	0.82[EUR][1000 genomes]
rs13309255	0.85[CEU][hapmap];0.85[EUR][1000 genomes]
rs13311466	0.82[EUR][1000 genomes]
rs34167422	0.87[EUR][1000 genomes]
rs35338607	0.93[AMR][1000 genomes]
rs35390376	0.82[EUR][1000 genomes]
rs35560707	0.87[EUR][1000 genomes]
rs36082909	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs71529336	0.85[EUR][1000 genomes]
rs71529343	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv606199	chr7:11506143-12486659	Active TSS Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	nsv534432	chr7:12148960-12693032	Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
3	nsv1024554	chr7:12214722-12967418	Active TSS Flanking Active TSS ZNF genes & repeats Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
4	nsv538735	chr7:12214722-12967418	Bivalent/Poised TSS Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
5	nsv1033704	chr7:12286225-12355773	Flanking Active TSS Weak transcription Active TSS Enhancers ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv887629	chr7:12304555-12400837	ZNF genes & repeats Enhancers Strong transcription Weak transcription Bivalent Enhancer Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv1019021	chr7:12310445-12375516	Enhancers Genic enhancers Weak transcription Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	nsv887630	chr7:12323757-12400837	Enhancers Weak transcription ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:12317800-12329400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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