Variant report
| Variant | rs12699984 |
|---|---|
| Chromosome Location | chr7:18852253-18852254 |
| allele | A/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:26)
| rs_ID | r2[population] |
|---|---|
| rs10251998 | 0.95[AFR][1000 genomes];0.92[ASN][1000 genomes] |
| rs10269422 | 0.94[ASN][1000 genomes] |
| rs12699982 | 1.00[CHB][hapmap] |
| rs12699983 | 1.00[CHB][hapmap] |
| rs12699985 | 1.00[CHB][hapmap] |
| rs13241157 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs13246896 | 0.87[ASN][1000 genomes] |
| rs17349622 | 1.00[CHB][hapmap] |
| rs2440598 | 1.00[CHB][hapmap] |
| rs2520341 | 0.92[ASN][1000 genomes] |
| rs2520342 | 0.92[ASN][1000 genomes] |
| rs2520343 | 0.92[ASN][1000 genomes] |
| rs2520354 | 0.95[AFR][1000 genomes];0.94[ASN][1000 genomes] |
| rs2520355 | 0.94[ASN][1000 genomes] |
| rs2588621 | 0.92[ASN][1000 genomes] |
| rs2588635 | 0.82[JPT][hapmap];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs2588637 | 0.96[AFR][1000 genomes];0.94[ASN][1000 genomes] |
| rs2588638 | 0.92[ASN][1000 genomes] |
| rs4001107 | 1.00[CHB][hapmap] |
| rs6948023 | 0.92[ASN][1000 genomes] |
| rs6965278 | 0.90[AFR][1000 genomes];0.80[AMR][1000 genomes];0.94[ASN][1000 genomes] |
| rs6972422 | 1.00[CHB][hapmap] |
| rs6974299 | 1.00[CHB][hapmap] |
| rs7459007 | 0.88[ASN][1000 genomes] |
| rs7794273 | 0.94[ASN][1000 genomes] |
| rs7810384 | 0.90[AFR][1000 genomes];0.92[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv498112 | chr7:18677922-18991946 | Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| 2 | nsv887813 | chr7:18720135-18995552 | Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| 3 | nsv887814 | chr7:18751998-18886177 | Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr7:18844000-18858000 | Weak transcription | H1 BMP4 Derived Mesendoderm Cultured Cells | ES cell derived |
