Variant report

Variant	rs12702395
Chromosome Location	chr7:47895182-47895183
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10429127	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12702394	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[YRI][hapmap]
rs13241400	1.00[JPT][hapmap]
rs13246591	1.00[JPT][hapmap]
rs13247692	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap]
rs17131825	1.00[JPT][hapmap]
rs17131827	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17545682	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1851403	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap]
rs2053985	1.00[CEU][hapmap]
rs6947342	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6950328	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6962855	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs7780916	1.00[JPT][hapmap]
rs7802098	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:14 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1026223	chr7:47560728-48243287	Genic enhancers Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv888003	chr7:47694270-47907214	Enhancers Weak transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
3	nsv869585	chr7:47765428-48151324	Flanking Active TSS Enhancers Strong transcription Bivalent/Poised TSS Weak transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
4	nsv830991	chr7:47854530-48025996	Weak transcription Active TSS Genic enhancers Strong transcription Enhancers Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	nsv532120	chr7:47882757-48195869	Active TSS Flanking Active TSS Enhancers Strong transcription Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
6	esv3324007	chr7:47895062-47895589	Weak transcription	n/a	n/a	inside rSNPs	diseases
7	esv3476058	chr7:47895078-47895607	Weak transcription	n/a	n/a	inside rSNPs	diseases
8	esv3526828	chr7:47895092-47895570	Weak transcription	n/a	n/a	inside rSNPs	diseases
9	esv3526827	chr7:47895105-47895539	Weak transcription	n/a	n/a	inside rSNPs	diseases
10	esv3476055	chr7:47895106-47895569	Weak transcription	n/a	n/a	inside rSNPs	diseases
11	esv3476057	chr7:47895110-47895573	Weak transcription	n/a	n/a	inside rSNPs	diseases
12	esv3476056	chr7:47895125-47895525	Weak transcription	n/a	n/a	inside rSNPs	diseases
13	esv3476059	chr7:47895182-47895510	Weak transcription	n/a	n/a	inside rSNPs	diseases
14	esv3526830	chr7:47895182-47895510	Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:47855800-47902400	Weak transcription	Adipose Nuclei	Adipose
2	chr7:47886200-47911000	Weak transcription	Psoas Muscle	Psoas
3	chr7:47886400-47905600	Weak transcription	Skeletal Muscle Female	skeletal muscle
4	chr7:47886800-47916000	Weak transcription	Right Ventricle	heart
5	chr7:47887000-47902400	Weak transcription	Lung	lung
6	chr7:47892600-47896600	Weak transcription	Left Ventricle	heart

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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