Variant report

Variant	rs12705585
Chromosome Location	chr7:109049072-109049073
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs11763389	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1406296	0.83[EUR][1000 genomes]
rs1406297	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1581661	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs56240857	0.83[EUR][1000 genomes]
rs6960556	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs848870	0.83[EUR][1000 genomes]
rs848877	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1026963	chr7:108979199-109103350	Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv1034274	chr7:109003574-109080396	Enhancers Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv1023379	chr7:109003574-109355234	Weak transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs12705585	LAMB4	cis	parietal	SCAN

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:109048200-109049400	Enhancers	Fetal Adrenal Gland	Adrenal Gland

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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