Variant report

Variant	rs12706097
Chromosome Location	chr7:78909696-78909697
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10237509	1.00[CEU][hapmap];0.85[CHB][hapmap];0.91[JPT][hapmap];0.89[EUR][1000 genomes]
rs10274885	1.00[CEU][hapmap];0.93[CHB][hapmap];0.91[JPT][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10280554	1.00[CEU][hapmap];0.93[CHB][hapmap];0.81[JPT][hapmap];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1071038	1.00[CEU][hapmap];0.85[CHB][hapmap]
rs10808182	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10953834	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11773085	1.00[CEU][hapmap];0.92[CHB][hapmap];0.91[JPT][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1358472	1.00[CEU][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1406165	0.86[CEU][hapmap]
rs1528259	0.86[CEU][hapmap]
rs1528260	0.86[CEU][hapmap];0.93[CHB][hapmap]
rs1528264	1.00[CEU][hapmap];0.92[CHB][hapmap];0.81[JPT][hapmap];0.91[ASN][1000 genomes]
rs1528268	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1528276	1.00[CEU][hapmap];0.93[CHB][hapmap];0.82[JPT][hapmap];0.91[ASN][1000 genomes]
rs1609281	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs16886524	1.00[CEU][hapmap];0.92[CHB][hapmap];0.82[JPT][hapmap];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17152178	1.00[CEU][hapmap];0.93[CHB][hapmap];0.91[JPT][hapmap];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17152192	1.00[CEU][hapmap];0.93[CHB][hapmap];0.82[JPT][hapmap];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17152223	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17237664	1.00[CEU][hapmap];0.90[JPT][hapmap];0.89[EUR][1000 genomes]
rs1881293	0.91[ASN][1000 genomes]
rs1881294	0.87[ASN][1000 genomes]
rs1881298	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1881299	1.00[CEU][hapmap];0.82[JPT][hapmap];0.90[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2190174	0.86[CEU][hapmap];0.92[CHB][hapmap]
rs6944731	1.00[CEU][hapmap];0.93[CHB][hapmap];0.81[JPT][hapmap];0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6954793	1.00[CEU][hapmap];0.92[CHB][hapmap];0.91[JPT][hapmap];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6966599	1.00[CEU][hapmap];0.92[CHB][hapmap];0.82[JPT][hapmap];0.91[ASN][1000 genomes]
rs6974095	1.00[CEU][hapmap];0.93[CHB][hapmap];0.91[JPT][hapmap];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs73153203	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73154930	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73154978	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7778707	0.86[CEU][hapmap];0.92[CHB][hapmap]
rs7811833	1.00[CEU][hapmap];0.92[CHB][hapmap];0.82[JPT][hapmap];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv464598	chr7:78492642-79483480	Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	nsv607659	chr7:78492642-79483480	Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
3	nsv1029799	chr7:78608097-79061737	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv437988	chr7:78806100-78910974	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv831041	chr7:78819499-78973222	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	esv2764028	chr7:78874740-79112630	Bivalent/Poised TSS Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
7	nsv971530	chr7:78909395-78914563	Weak transcription Active TSS Flanking Active TSS Enhancers	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:78896800-78911600	Weak transcription	Aorta	Aorta
2	chr7:78902400-78910200	Weak transcription	Osteobl	bone
3	chr7:78902600-78911600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr7:78907600-78910800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr7:78907800-78911600	Weak transcription	Psoas Muscle	Psoas
6	chr7:78908000-78910400	Weak transcription	Brain Cingulate Gyrus	brain
7	chr7:78908000-78911600	Weak transcription	Brain Hippocampus Middle	brain
8	chr7:78908200-78910400	Weak transcription	Muscle Satellite Cultured Cells	--
9	chr7:78908600-78911600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr7:78908600-78911600	Weak transcription	Brain Inferior Temporal Lobe	brain
11	chr7:78908800-78909800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr7:78908800-78910000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr7:78909600-78911600	Enhancers	NHLF	lung

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