Variant report

Variant	rs12706177
Chromosome Location	chr7:79068898-79068899
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10226316	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10226488	0.80[ASN][1000 genomes]
rs10233817	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10238639	0.88[CEU][hapmap];0.94[JPT][hapmap];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10239130	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10251407	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10255409	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10258595	0.85[CEU][hapmap];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10485959	0.80[JPT][hapmap]
rs10808188	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2214804	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2365421	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2886360	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4730832	0.83[CEU][hapmap];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4730835	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4730857	0.88[CEU][hapmap];0.94[JPT][hapmap];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4730874	0.84[CEU][hapmap];0.94[JPT][hapmap];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4730878	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4730892	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6466663	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6466670	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6974444	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7777453	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7801286	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7802400	0.88[CEU][hapmap];0.94[JPT][hapmap];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7808033	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7810711	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7810716	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7812062	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv464598	chr7:78492642-79483480	Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	nsv607659	chr7:78492642-79483480	Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
3	esv2764028	chr7:78874740-79112630	Bivalent/Poised TSS Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv888515	chr7:78987060-79221707	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv607668	chr7:79029872-79070452	Weak transcription Enhancers Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv427792	chr7:79039802-79253373	Weak transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
7	nsv970902	chr7:79046674-79175610	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:79064600-79071600	Weak transcription	NHDF-Ad	bronchial

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