Variant report

Variant	rs12707372
Chromosome Location	chr7:137400573-137400574
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs12056089	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12707364	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12707367	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1424370	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1424371	0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1991084	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2113428	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2882781	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3778798	0.81[ASN][1000 genomes]
rs3778799	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3800624	0.80[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs3800626	0.82[ASN][1000 genomes]
rs3800628	0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3800630	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3800636	0.84[ASN][1000 genomes]
rs3800637	0.84[ASN][1000 genomes]
rs3823552	0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4732263	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4732264	0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6971978	0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7457119	0.81[ASN][1000 genomes]
rs7806658	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7806810	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022793	chr7:137187383-137619359	Weak transcription Enhancers Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv464731	chr7:137356651-137404781	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a
3	nsv608466	chr7:137356651-137404781	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:137396400-137400600	Weak transcription	HUES64 Cell Line	embryonic stem cell
2	chr7:137396400-137400600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr7:137396400-137400800	Weak transcription	HUES48 Cell Line	embryonic stem cell
4	chr7:137399200-137400800	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr7:137399200-137401200	Enhancers	Osteobl	bone
6	chr7:137399200-137403200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr7:137399400-137403600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr7:137399600-137400800	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr7:137399600-137401800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
10	chr7:137399600-137402600	Enhancers	Muscle Satellite Cultured Cells	--
11	chr7:137399800-137400800	Enhancers	NHDF-Ad	bronchial
12	chr7:137399800-137403200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr7:137400000-137401000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr7:137400000-137401000	Enhancers	HSMM	muscle
15	chr7:137400200-137400800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
16	chr7:137400200-137400800	Enhancers	NH-A	brain
17	chr7:137400200-137401600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr7:137400200-137402600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr7:137400400-137400600	Enhancers	ES-I3 Cell Line	embryonic stem cell
20	chr7:137400400-137400800	Enhancers	ES-WA7 Cell Line	embryonic stem cell
21	chr7:137400400-137400800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr7:137400400-137400800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
23	chr7:137400400-137402800	Enhancers	Cortex derived primary cultured neurospheres	brain

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