Variant report

Variant	rs12708397
Chromosome Location	chr15:39803670-39803671
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:39796929..39799190-chr15:39801226..39804372,3	MCF-7	breast:
2	chr15:39801381..39804712-chr15:39805138..39808272,3	K562	blood:
3	chr15:39802198..39806304-chr15:39871801..39874775,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000137801	Chromatin interaction
ENSG00000259390	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs11639087	1.00[CEU][hapmap]
rs12592357	1.00[CEU][hapmap]
rs4924366	1.00[CEU][hapmap]
rs719964	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs8038823	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049682	chr15:39657279-40027403	Enhancers Flanking Active TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv542361	chr15:39657279-40027403	Weak transcription Strong transcription Enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
3	esv3373125	chr15:39691567-40061262	Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Bivalent/Poised TSS Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
4	nsv904094	chr15:39738006-39976057	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:47 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:39796800-39804000	Weak transcription	Lung	lung
2	chr15:39800600-39803800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr15:39801000-39804000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr15:39801800-39803800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr15:39802000-39804600	Enhancers	NH-A	brain
6	chr15:39802000-39805200	Enhancers	K562	blood
7	chr15:39802000-39806000	Enhancers	Fetal Muscle Leg	muscle
8	chr15:39802200-39804000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr15:39802200-39804200	Enhancers	Right Atrium	heart
10	chr15:39802200-39805200	Enhancers	Skeletal Muscle Male	skeletal muscle
11	chr15:39802600-39804000	Weak transcription	Right Ventricle	heart
12	chr15:39802800-39805400	Enhancers	Fetal Heart	heart
13	chr15:39803200-39803800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr15:39803200-39803800	Enhancers	HUVEC	blood vessel
15	chr15:39803200-39803800	Enhancers	NHLF	lung
16	chr15:39803200-39804200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr15:39803200-39804200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr15:39803200-39804200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
19	chr15:39803200-39804200	Enhancers	HMEC	breast
20	chr15:39803200-39804400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
21	chr15:39803200-39804400	Enhancers	Skeletal Muscle Female	skeletal muscle
22	chr15:39803200-39804800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr15:39803200-39805000	Enhancers	Colon Smooth Muscle	Colon
24	chr15:39803200-39805000	Enhancers	Left Ventricle	heart
25	chr15:39803400-39803800	Weak transcription	Placenta Amnion	Placenta Amnion
26	chr15:39803400-39804000	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin03	Skin
27	chr15:39803400-39804200	Enhancers	Small Intestine	intestine
28	chr15:39803400-39804200	Enhancers	NHEK	skin
29	chr15:39803400-39804400	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
30	chr15:39803400-39804400	Flanking Active TSS	Osteobl	bone
31	chr15:39803400-39805000	Enhancers	Breast Myoepithelial Primary Cells	Breast
32	chr15:39803400-39805000	Enhancers	Adipose Nuclei	Adipose
33	chr15:39803400-39805000	Enhancers	Fetal Lung	lung
34	chr15:39803400-39805200	Enhancers	Colonic Mucosa	Colon
35	chr15:39803400-39805400	Enhancers	Fetal Stomach	stomach
36	chr15:39803600-39803800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
37	chr15:39803600-39803800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
38	chr15:39803600-39803800	Enhancers	Muscle Satellite Cultured Cells	--
39	chr15:39803600-39803800	Enhancers	HSMM	muscle
40	chr15:39803600-39803800	Enhancers	HSMMtube	muscle
41	chr15:39803600-39803800	Enhancers	NHDF-Ad	bronchial
42	chr15:39803600-39804200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
43	chr15:39803600-39804400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
44	chr15:39803600-39804400	Enhancers	Placenta	Placenta
45	chr15:39803600-39804600	Enhancers	Ovary	ovary
46	chr15:39803600-39804600	Enhancers	Rectal Smooth Muscle	rectum
47	chr15:39803600-39805200	Enhancers	Fetal Muscle Trunk	muscle

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