Variant report

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	FOSL1	chr4:111208104-111208831	HCT-116	colon:	n/a	n/a
2	FOS	chr4:111208265-111208821	MCF10A-Er-Src	breast:	n/a	n/a
3	SP1	chr4:111208146-111208898	HCT-116	colon:	n/a	n/a
4	CUX1	chr4:111208739-111208927	K562	blood:	n/a	n/a
5	BATF	chr4:111208221-111208808	GM12878	blood:	n/a	n/a
6	TBL1XR1	chr4:111208349-111209063	GM12878	blood:	n/a	n/a
7	EBF1	chr4:111208292-111208861	GM12878	blood:	n/a	n/a
8	MTA3	chr4:111207943-111208874	GM12878	blood:	n/a	n/a
9	EP300	chr4:111208333-111209046	GM12878	blood:	n/a	n/a
10	MEF2C	chr4:111208243-111208862	GM12878	blood:	n/a	n/a
11	RUNX3	chr4:111208221-111208926	GM12878	blood:	n/a	n/a
12	STAT3	chr4:111208348-111208880	GM12878	blood:	n/a	chr4:111208590-111208601
13	ELK1	chr4:111208660-111208858	GM12878	blood:	n/a	n/a
14	RUNX3	chr4:111208210-111208991	GM12878	blood:	n/a	n/a
15	EP300	chr4:111208273-111208926	GM12878	blood:	n/a	n/a
16	MYC	chr4:111208312-111208970	MCF10A-Er-Src	breast:	n/a	n/a
17	BCL11A	chr4:111208206-111208821	GM12878	blood:	n/a	n/a
18	NFIC	chr4:111208176-111208812	GM12878	blood:	n/a	n/a
19	JUND	chr4:111208116-111209076	SK-N-SH	brain:	n/a	chr4:111208449-111208460
20	ATF2	chr4:111208232-111208954	GM12878	blood:	n/a	n/a
21	POLR2A	chr4:111208132-111208918	MCF10A-Er-Src	breast:	n/a	n/a
22	IKZF1	chr4:111208305-111208936	GM12878	blood:	n/a	n/a
23	NFIC	chr4:111208204-111208977	GM12878	blood:	n/a	n/a
24	ATF2	chr4:111208143-111208885	GM12878	blood:	n/a	n/a
25	SMC3	chr4:111208260-111209011	GM12878	blood:	n/a	n/a

Variant related genes	Relation type
ZBED1P1	TF binding region

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10025747	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12233726	0.92[EUR][1000 genomes]
rs17440767	0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17620645	0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2713949	0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4698825	0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4698826	0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4698827	0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4698828	0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4698829	0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4698830	0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72886465	0.92[EUR][1000 genomes]
rs9992732	0.87[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869392	chr4:110945459-111235071	Flanking Active TSS Weak transcription Strong transcription Active TSS Enhancers Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:111208000-111209000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr4:111208000-111209000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr4:111208000-111209000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr4:111208000-111209000	Enhancers	Muscle Satellite Cultured Cells	--
5	chr4:111208000-111209000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr4:111208000-111209000	Enhancers	Skeletal Muscle Female	skeletal muscle
7	chr4:111208000-111209000	Enhancers	HSMM	muscle
8	chr4:111208000-111209000	Enhancers	HSMMtube	muscle
9	chr4:111208000-111209000	Enhancers	NH-A	brain
10	chr4:111208200-111209000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr4:111208200-111209000	Flanking Active TSS	GM12878-XiMat	blood
12	chr4:111208200-111209000	Enhancers	Hela-S3	cervix
13	chr4:111208200-111209000	Enhancers	Osteobl	bone
14	chr4:111208200-111209200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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