Variant report

Variant	rs12711747
Chromosome Location	chr2:113785020-113785021
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:113783308..113785496-chr2:113859817..113861348,2	K562	blood:
2	chr2:113780916..113783936-chr2:113784891..113788063,3	K562	blood:
3	chr2:113778463..113783936-chr2:113784891..113788081,5	K562	blood:

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs1006122	0.91[CHB][hapmap];0.86[CHD][hapmap]
rs1013477	0.95[EUR][1000 genomes]
rs10200415	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10864909	0.81[EUR][1000 genomes]
rs11673918	0.97[EUR][1000 genomes]
rs11686530	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12468503	0.94[EUR][1000 genomes]
rs12711746	0.81[CEU][hapmap];0.82[AMR][1000 genomes]
rs13030063	0.89[CEU][hapmap];0.95[TSI][hapmap];0.97[EUR][1000 genomes]
rs13033574	0.95[EUR][1000 genomes]
rs1374284	0.81[CEU][hapmap];0.90[MEX][hapmap];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs28947181	0.91[EUR][1000 genomes]
rs4849139	0.95[EUR][1000 genomes]
rs4849140	0.96[EUR][1000 genomes]
rs4849142	0.89[CEU][hapmap];0.95[TSI][hapmap];0.96[EUR][1000 genomes]
rs6542108	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6542109	0.81[CEU][hapmap];0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6710007	0.89[CEU][hapmap];0.95[TSI][hapmap];0.96[EUR][1000 genomes]
rs6744288	0.88[CEU][hapmap];0.96[EUR][1000 genomes]
rs6744874	0.91[CHB][hapmap]
rs7571656	0.81[CEU][hapmap];0.90[MEX][hapmap]
rs9308681	0.91[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532471	chr2:113682449-113862981	ZNF genes & repeats Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv997348	chr2:113688093-113986508	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
3	nsv1007254	chr2:113726982-113887782	Enhancers Flanking Active TSS Weak transcription Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
4	nsv535894	chr2:113726982-113887782	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
5	nsv961339	chr2:113772508-113796318	Enhancers Bivalent Enhancer Weak transcription Bivalent/Poised TSS Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv874885	chr2:113783671-113807021	Enhancers Weak transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:113765600-113797400	Weak transcription	Gastric	stomach
2	chr2:113782800-113785800	Weak transcription	K562	blood

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