Variant report

Variant	rs12713467
Chromosome Location	chrX:62669100-62669101
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10153716	0.91[EUR][1000 genomes]
rs1022110	0.80[EUR][1000 genomes]
rs11682530	0.83[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs11688816	0.89[ASN][1000 genomes]
rs12713468	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12989754	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12994674	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13013218	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1420018	0.88[ASN][1000 genomes]
rs1553832	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1828398	0.83[EUR][1000 genomes]
rs189671	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1906198	0.81[EUR][1000 genomes]
rs2058566	0.86[ASN][1000 genomes]
rs2136737	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2215870	0.87[ASN][1000 genomes]
rs2430388	0.80[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs2539980	0.81[ASN][1000 genomes]
rs2539985	0.87[ASN][1000 genomes]
rs2710638	0.86[ASN][1000 genomes]
rs2710640	0.87[ASN][1000 genomes]
rs2710642	0.87[ASN][1000 genomes]
rs34104251	0.88[AFR][1000 genomes];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs360797	0.86[EUR][1000 genomes]
rs360799	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs360800	0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs360801	0.94[ASN][1000 genomes]
rs360804	0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs360807	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3927201	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4461246	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4671050	0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4671051	0.83[EUR][1000 genomes]
rs4671448	0.83[ASN][1000 genomes]
rs4671450	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6545971	0.88[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs7562149	0.81[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs7562734	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7573756	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9678329	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9973612	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817395	chrX:62473681-63131313	Enhancers Bivalent Enhancer Weak transcription Active TSS Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:62642000-62671800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chrX:62642400-62677000	Weak transcription	Left Ventricle	heart
3	chrX:62646800-62672400	Weak transcription	Gastric	stomach
4	chrX:62647600-62672000	Weak transcription	Duodenum Mucosa	Duodenum
5	chrX:62647600-62672000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
6	chrX:62649200-62672400	Weak transcription	Ovary	ovary
7	chrX:62652600-62672400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
8	chrX:62652600-62672400	Weak transcription	Fetal Intestine Large	intestine
9	chrX:62656800-62671800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chrX:62657000-62672000	Weak transcription	Pancreas	Pancrea
11	chrX:62657000-62672400	Weak transcription	Sigmoid Colon	Sigmoid Colon
12	chrX:62657000-62673000	Weak transcription	Esophagus	oesophagus
13	chrX:62661000-62672200	Weak transcription	Pancreatic Islets	Pancreatic Islet
14	chrX:62662000-62671600	Weak transcription	Aorta	Aorta

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