Variant report

Variant	rs12720847
Chromosome Location	chr2:21235375-21235376
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs12713558	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];0.80[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12720792	1.00[ASW][hapmap];0.92[LWK][hapmap];0.96[MKK][hapmap]
rs12720823	0.85[AFR][1000 genomes]
rs61736761	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3446962	chr2:21231647-21236245	Strong transcription Enhancers ZNF genes & repeats Weak transcription Active TSS Genic enhancers Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:21223200-21245600	Strong transcription	Liver	Liver
2	chr2:21225600-21236400	ZNF genes & repeats	Fetal Intestine Small	intestine
3	chr2:21233600-21236200	ZNF genes & repeats	Aorta	Aorta
4	chr2:21234200-21236000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr2:21234200-21240600	Weak transcription	Left Ventricle	heart
6	chr2:21234800-21262200	Weak transcription	Ovary	ovary
7	chr2:21235000-21236800	Strong transcription	HepG2	liver
8	chr2:21235000-21240200	Weak transcription	Adipose Nuclei	Adipose
9	chr2:21235000-21246600	Strong transcription	Duodenum Mucosa	Duodenum
10	chr2:21235000-21261800	Strong transcription	Fetal Intestine Large	intestine

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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