Variant report

Variant	rs12722630
Chromosome Location	chr10:6096793-6096794
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:6092360..6095172-chr10:6096702..6099440,2	K562	blood:

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs12722625	0.83[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34147	chr10:5726821-6105717	Strong transcription Weak transcription Genic enhancers Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	esv34061	chr10:5726821-6225187	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
3	nsv1042286	chr10:5795129-6578445	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	76 gene(s)	inside rSNPs	diseases
4	nsv894814	chr10:6078032-6100725	Enhancers Active TSS Weak transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	esv3434679	chr10:6096746-6098894	Enhancers Weak transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:6093400-6096800	Enhancers	Adipose Nuclei	Adipose
2	chr10:6093400-6097200	Enhancers	Breast Myoepithelial Primary Cells	Breast
3	chr10:6093400-6101000	Weak transcription	Psoas Muscle	Psoas
4	chr10:6093400-6102800	Enhancers	Primary B cells from peripheral blood	blood
5	chr10:6093800-6104200	Transcr. at gene 5' and 3'	Primary T helper cells PMA-I stimulated	--
6	chr10:6094000-6097400	Transcr. at gene 5' and 3'	Primary T helper 17 cells PMA-I stimulated	--
7	chr10:6094200-6097200	Enhancers	Spleen	Spleen
8	chr10:6094800-6096800	Enhancers	Primary T killer memory cells from peripheral blood	blood
9	chr10:6094800-6097200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
10	chr10:6095000-6096800	Enhancers	Fetal Intestine Small	intestine
11	chr10:6095000-6097000	Enhancers	Primary T helper cells fromperipheralblood	blood
12	chr10:6095000-6097200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
13	chr10:6095200-6098400	Weak transcription	Left Ventricle	heart
14	chr10:6095400-6097400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
15	chr10:6095800-6096800	Enhancers	Fetal Intestine Large	intestine
16	chr10:6095800-6097200	Transcr. at gene 5' and 3'	Primary T regulatory cells fromperipheralblood	blood
17	chr10:6096000-6097200	Enhancers	Lung	lung
18	chr10:6096000-6097400	Enhancers	GM12878-XiMat	blood
19	chr10:6096200-6098600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
20	chr10:6096200-6098800	Weak transcription	Skeletal Muscle Male	skeletal muscle
21	chr10:6096200-6102000	Weak transcription	Primary hematopoietic stem cells	blood
22	chr10:6096200-6107400	Weak transcription	Placenta	Placenta
23	chr10:6096400-6096800	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
24	chr10:6096400-6096800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
25	chr10:6096400-6096800	Flanking Active TSS	Liver	Liver
26	chr10:6096400-6100200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
27	chr10:6096400-6100400	Weak transcription	Primary T cells from cord blood	blood
28	chr10:6096400-6102800	Weak transcription	Primary monocytes fromperipheralblood	blood
29	chr10:6096400-6103800	Weak transcription	Sigmoid Colon	Sigmoid Colon
30	chr10:6096600-6096800	Enhancers	Small Intestine	intestine
31	chr10:6096600-6096800	Bivalent Enhancer	HepG2	liver
32	chr10:6096600-6098400	Weak transcription	Right Atrium	heart
33	chr10:6096600-6098600	Weak transcription	Primary B cells from cord blood	blood
34	chr10:6096600-6098600	Weak transcription	Primary T cells fromperipheralblood	blood
35	chr10:6096600-6100600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
36	chr10:6096600-6103600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links