Variant report
| Variant | rs12723222 |
|---|---|
| Chromosome Location | chr1:93529350-93529351 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:3)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:3 , 50 per page) page:
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| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000122406 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:18)
| rs_ID | r2[population] |
|---|---|
| rs10874755 | 0.91[ASN][1000 genomes] |
| rs1382899 | 0.91[ASN][1000 genomes] |
| rs2249471 | 0.92[ASN][1000 genomes] |
| rs2249474 | 0.92[ASN][1000 genomes] |
| rs2249590 | 0.82[ASN][1000 genomes] |
| rs2249591 | 0.91[ASN][1000 genomes] |
| rs2249734 | 0.91[ASN][1000 genomes] |
| rs2260224 | 0.92[ASN][1000 genomes] |
| rs2265430 | 0.94[ASN][1000 genomes] |
| rs2619818 | 0.92[ASN][1000 genomes] |
| rs2785597 | 0.94[ASN][1000 genomes] |
| rs520885 | 0.82[ASN][1000 genomes] |
| rs524518 | 0.91[ASN][1000 genomes] |
| rs525432 | 0.91[ASN][1000 genomes] |
| rs563588 | 0.84[ASN][1000 genomes] |
| rs670208 | 0.84[ASN][1000 genomes] |
| rs671012 | 0.90[ASN][1000 genomes] |
| rs682967 | 0.82[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
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| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1008602 | chr1:93176811-93640808 | Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 51 gene(s) | inside rSNPs | diseases |
| 2 | nsv830614 | chr1:93465978-93678700 | Strong transcription Weak transcription Enhancers Active TSS Genic enhancers ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 34 gene(s) | inside rSNPs | diseases |
| 3 | nsv870775 | chr1:93481640-93543119 | Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
