Variant report

Variant	rs12725937
Chromosome Location	chr1:155790989-155790990
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs35790033	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs45498104	1.00[AFR][1000 genomes]
rs71628688	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv33869	chr1:155223283-155917961	Flanking Active TSS Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	187 gene(s)	inside rSNPs	diseases
2	esv3423892	chr1:155664084-155901487	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
3	nsv872469	chr1:155743310-155810293	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv1003170	chr1:155762204-155836564	Flanking Active TSS Strong transcription Weak transcription Bivalent Enhancer Active TSS Enhancers Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:155716000-155793400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr1:155717400-155795800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr1:155720200-155798200	Strong transcription	Fetal Thymus	thymus
4	chr1:155720200-155803600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr1:155720400-155796800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
6	chr1:155746400-155791400	Weak transcription	Stomach Mucosa	stomach
7	chr1:155747800-155791200	Weak transcription	Fetal Heart	heart
8	chr1:155762200-155798000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr1:155765200-155803800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
10	chr1:155765200-155813200	Weak transcription	Psoas Muscle	Psoas
11	chr1:155771400-155798400	Strong transcription	Fetal Muscle Leg	muscle
12	chr1:155771600-155798200	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr1:155772000-155798000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr1:155775000-155795600	Weak transcription	Small Intestine	intestine
15	chr1:155776000-155796600	Strong transcription	H1 Cell Line	embryonic stem cell
16	chr1:155777200-155795800	Weak transcription	Aorta	Aorta
17	chr1:155778000-155797200	Strong transcription	iPS-20b Cell Line	embryonic stem cell
18	chr1:155778200-155795400	Strong transcription	Primary T helper cells PMA-I stimulated	--
19	chr1:155779600-155797600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
20	chr1:155780000-155797800	Strong transcription	Primary T cells fromperipheralblood	blood
21	chr1:155780000-155798000	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
22	chr1:155780200-155796400	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
23	chr1:155780200-155796800	Strong transcription	Osteobl	bone
24	chr1:155780200-155797600	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
25	chr1:155780400-155791400	Strong transcription	Liver	Liver
26	chr1:155780400-155793800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
27	chr1:155780400-155796800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
28	chr1:155780400-155797400	Strong transcription	Adipose Nuclei	Adipose
29	chr1:155780400-155797600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
30	chr1:155780400-155797600	Strong transcription	Dnd41	blood
31	chr1:155780400-155797600	Strong transcription	Monocytes-CD14+_RO01746	blood
32	chr1:155780400-155797800	Strong transcription	Primary T helper cells fromperipheralblood	blood
33	chr1:155780400-155798200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
34	chr1:155780600-155794200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
35	chr1:155780600-155796000	Strong transcription	HUES64 Cell Line	embryonic stem cell
36	chr1:155780600-155796400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
37	chr1:155780600-155796800	Strong transcription	Primary T cells from cord blood	blood
38	chr1:155780600-155797000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
39	chr1:155780600-155797200	Strong transcription	HUES48 Cell Line	embryonic stem cell
40	chr1:155780600-155797200	Strong transcription	NH-A	brain
41	chr1:155781600-155796800	Strong transcription	Placenta	Placenta
42	chr1:155781600-155798000	Strong transcription	Primary monocytes fromperipheralblood	blood
43	chr1:155781600-155798200	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
44	chr1:155781800-155797000	Strong transcription	Primary B cells from peripheral blood	blood
45	chr1:155782000-155796800	Strong transcription	Duodenum Mucosa	Duodenum
46	chr1:155782200-155796400	Strong transcription	iPS-18 Cell Line	embryonic stem cell
47	chr1:155782200-155800800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
48	chr1:155782400-155793800	Strong transcription	Rectal Mucosa Donor 31	rectum
49	chr1:155782400-155794200	Strong transcription	Hela-S3	cervix
50	chr1:155782400-155795400	Strong transcription	Skeletal Muscle Female	skeletal muscle

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