Variant report

Variant	rs12726397
Chromosome Location	chr5:74430119-74430120
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10159229	0.84[EUR][1000 genomes]
rs1060309	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10785714	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10881166	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10881197	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11184270	0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11184298	0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11184430	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12085609	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4244372	0.88[ASN][1000 genomes]
rs4447018	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4847151	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6661612	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6671663	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6690291	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6692121	0.85[EUR][1000 genomes]
rs7529144	0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7535259	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7537183	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018865	chr5:74246293-74494552	Weak transcription Active TSS Flanking Active TSS Enhancers Bivalent Enhancer Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv882189	chr5:74356857-74478078	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv1016610	chr5:74403611-74627654	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:74427600-74434600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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