Variant report

Variant	rs12730701
Chromosome Location	chrY:22621174-22621175
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs12744709	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12750312	0.96[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12753609	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12758478	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs17680493	0.96[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs28924725	0.96[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs34417380	0.96[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs34686286	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs34974823	0.96[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs35000490	0.96[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs35036485	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs3885994	0.87[AMR][1000 genomes]
rs71626743	0.96[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs71626744	0.96[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs71626746	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs71626747	0.96[AMR][1000 genomes];0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv930979	chrY:22515425-23165096	Strong transcription Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrY:22611800-22628800	Weak transcription	Left Ventricle	heart

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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