Variant report

Variant	rs12731436
Chromosome Location	chr1:166459300-166459301
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	TEAD4	chr1:166458764-166460069	K562	blood:	n/a	n/a
2	RELA	chr1:166458847-166459908	GM18951	blood:	n/a	chr1:166459648-166459657 chr1:166459648-166459657
3	RELA	chr1:166458858-166459911	GM15510	blood:	n/a	chr1:166459648-166459657 chr1:166459648-166459657
4	POLR2A	chr1:166458845-166459666	K562	blood:	n/a	n/a
5	GTF2F1	chr1:166458798-166459563	K562	blood:	n/a	n/a
6	STAT5A	chr1:166458912-166459517	K562	blood:	n/a	n/a
7	UBTF	chr1:166459176-166459395	K562	blood:	n/a	n/a
8	POLR2A	chr1:166458769-166459771	GM12892	blood:	n/a	n/a
9	EP300	chr1:166459018-166459507	K562	blood:	n/a	n/a
10	CBX3	chr1:166458685-166460518	K562	blood:	n/a	n/a
11	POLR2A	chr1:166458844-166459619	GM12891	blood:	n/a	n/a
12	POLR2A	chr1:166458830-166459681	GM12891	blood:	n/a	n/a
13	JUND	chr1:166458808-166459966	K562	blood:	n/a	chr1:166459627-166459636 chr1:166459626-166459637
14	TAL1	chr1:166458857-166459847	K562	blood:	n/a	n/a
15	HEY1	chr1:166458744-166459768	K562	blood:	n/a	n/a
16	MYC	chr1:166458866-166459850	K562	blood:	n/a	chr1:166459628-166459637
17	MXI1	chr1:166459203-166459624	HepG2	liver:	n/a	n/a
18	FOSL1	chr1:166458950-166459892	K562	blood:	n/a	chr1:166459627-166459636
19	CEBPB	chr1:166458565-166459344	K562	blood:	n/a	n/a
20	MAFK	chr1:166458780-166459740	K562	blood:	n/a	n/a
21	GATA1	chr1:166458786-166459572	PBDE	blood:	n/a	n/a
22	CHD2	chr1:166458986-166459606	K562	blood:	n/a	n/a
23	MXI1	chr1:166458936-166459613	K562	blood:	n/a	n/a
24	BHLHE40	chr1:166458772-166460221	K562	blood:	n/a	n/a
25	MAX	chr1:166458720-166459894	K562	blood:	n/a	chr1:166459628-166459637
26	NR2F2	chr1:166458877-166460040	K562	blood:	n/a	n/a
27	MYC	chr1:166458608-166459919	K562	blood:	n/a	chr1:166459628-166459637
28	HCFC1	chr1:166458798-166460046	K562	blood:	n/a	n/a
29	MAX	chr1:166458824-166459729	K562	blood:	n/a	chr1:166459628-166459637
30	PML	chr1:166458970-166459531	K562	blood:	n/a	n/a
31	STAT5A	chr1:166458765-166459587	K562	blood:	n/a	n/a
32	MAFF	chr1:166458785-166459972	K562	blood:	n/a	n/a
33	TBP	chr1:166458985-166459849	GM12878	blood:	n/a	n/a
34	RELA	chr1:166459022-166459859	GM10847	blood:	n/a	chr1:166459648-166459657 chr1:166459648-166459657
35	TRIM28	chr1:166458769-166459704	K562	blood:	n/a	n/a
36	MAX	chr1:166459275-166459580	NB4	blood:	n/a	n/a
37	PRDM1	chr1:166459260-166459548	Hela-S3	cervix:	n/a	chr1:166459364-166459379 chr1:166459381-166459396
38	RELA	chr1:166458964-166460005	GM12891	blood:	n/a	chr1:166459648-166459657 chr1:166459648-166459657
39	MXI1	chr1:166458774-166459692	GM12878	blood:	n/a	n/a
40	ARID3A	chr1:166458534-166459352	K562	blood:	n/a	n/a
41	NR2F2	chr1:166459043-166459579	K562	blood:	n/a	n/a
42	POLR2A	chr1:166458902-166459889	GM12878	blood:	n/a	n/a
43	MYC	chr1:166458810-166460004	K562	blood:	n/a	chr1:166459628-166459637
44	REST	chr1:166458857-166459460	K562	blood:	n/a	n/a
45	TBP	chr1:166458763-166459955	K562	blood:	n/a	n/a
46	EGR1	chr1:166458887-166459451	K562	blood:	n/a	n/a
47	SIN3AK20	chr1:166458883-166459637	K562	blood:	n/a	n/a
48	MAX	chr1:166458829-166459571	HCT-116	colon:	n/a	n/a
49	JUN	chr1:166458818-166459864	K562	blood:	n/a	chr1:166459627-166459636
50	WRNIP1	chr1:166459031-166460074	GM12878	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:166458815..166461765-chr1:166845065..166847210,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000234142	TF binding region
ENSG00000152382	Chromatin interaction

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916491	chr1:166000783-166948513	Bivalent/Poised TSS Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
2	nsv946484	chr1:166458528-166461650	Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:63 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:166458000-166460000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr1:166458000-166460000	Flanking Active TSS	Dnd41	blood
3	chr1:166458000-166460000	Active TSS	GM12878-XiMat	blood
4	chr1:166458600-166459800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr1:166458800-166459600	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr1:166458800-166459600	Active TSS	Primary T helper naive cells fromperipheralblood	blood
7	chr1:166458800-166459600	Flanking Active TSS	Primary mononuclear cells fromperipheralblood	Blood
8	chr1:166458800-166459600	Active TSS	Liver	Liver
9	chr1:166458800-166459600	Active TSS	Fetal Thymus	thymus
10	chr1:166458800-166459600	Active TSS	Psoas Muscle	Psoas
11	chr1:166458800-166459600	Active TSS	Skeletal Muscle Male	skeletal muscle
12	chr1:166458800-166459600	Active TSS	Stomach Smooth Muscle	stomach
13	chr1:166458800-166459600	Active TSS	NHDF-Ad	bronchial
14	chr1:166458800-166459800	Active TSS	Colonic Mucosa	Colon
15	chr1:166458800-166459800	Active TSS	Duodenum Smooth Muscle	Duodenum
16	chr1:166458800-166459800	Enhancers	Gastric	stomach
17	chr1:166458800-166459800	Active TSS	Rectal Smooth Muscle	rectum
18	chr1:166458800-166459800	Active TSS	Skeletal Muscle Female	skeletal muscle
19	chr1:166458800-166459800	Active TSS	Thymus	Thymus
20	chr1:166458800-166460000	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr1:166458800-166460000	Enhancers	Fetal Muscle Leg	muscle
22	chr1:166458800-166460000	Active TSS	Rectal Mucosa Donor 29	rectum
23	chr1:166459000-166459400	Active TSS	Primary T helper memory cells from peripheral blood 1	blood
24	chr1:166459000-166459400	Flanking Active TSS	Hela-S3	cervix
25	chr1:166459000-166459600	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
26	chr1:166459000-166459600	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
27	chr1:166459000-166459600	Active TSS	Primary monocytes fromperipheralblood	blood
28	chr1:166459000-166459600	Active TSS	Primary neutrophils fromperipheralblood	blood
29	chr1:166459000-166459600	Active TSS	Primary T helper naive cells from peripheral blood	blood
30	chr1:166459000-166459600	Active TSS	Primary T killer naive cells fromperipheralblood	blood
31	chr1:166459000-166459600	Active TSS	Primary T killer memory cells from peripheral blood	blood
32	chr1:166459000-166459600	Active TSS	Pancreatic Islets	Pancreatic Islet
33	chr1:166459000-166459600	Active TSS	Fetal Muscle Trunk	muscle
34	chr1:166459000-166459600	Active TSS	Placenta	Placenta
35	chr1:166459000-166459600	Active TSS	Left Ventricle	heart
36	chr1:166459000-166459600	Active TSS	Ovary	ovary
37	chr1:166459000-166459600	Active TSS	Pancreas	Pancrea
38	chr1:166459000-166459600	Active TSS	Right Atrium	heart
39	chr1:166459000-166459600	Active TSS	Monocytes-CD14+_RO01746	blood
40	chr1:166459000-166459600	Active TSS	NHEK	skin
41	chr1:166459000-166459800	Active TSS	Primary T cells from cord blood	blood
42	chr1:166459000-166459800	Active TSS	Primary hematopoietic stem cells	blood
43	chr1:166459000-166459800	Active TSS	Colon Smooth Muscle	Colon
44	chr1:166459000-166459800	Active TSS	Rectal Mucosa Donor 31	rectum
45	chr1:166459000-166459800	Active TSS	A549	lung
46	chr1:166459200-166459400	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
47	chr1:166459200-166459400	Active TSS	Primary T helper cells fromperipheralblood	blood
48	chr1:166459200-166459400	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
49	chr1:166459200-166459400	Active TSS	Adipose Nuclei	Adipose
50	chr1:166459200-166459400	Bivalent/Poised TSS	HepG2	liver

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links