Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:168687992..168690968-chr1:169074468..169076172,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000143153	Chromatin interaction

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs12724957	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12746351	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12755641	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34454480	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs35012377	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs35371130	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs35942875	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs36092372	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs57717884	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6698634	1.00[YRI][hapmap];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs71632375	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs71632376	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869415	chr1:168467284-169153863	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	44 gene(s)	inside rSNPs	diseases
2	nsv831836	chr1:168538779-168716956	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv831847	chr1:168669877-168850129	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:168678200-168695600	Weak transcription	Fetal Muscle Trunk	muscle
2	chr1:168679200-168694600	Weak transcription	Fetal Muscle Leg	muscle
3	chr1:168679600-168694600	Weak transcription	Fetal Stomach	stomach
4	chr1:168679800-168694600	Weak transcription	Stomach Smooth Muscle	stomach
5	chr1:168680200-168694800	Weak transcription	Duodenum Smooth Muscle	Duodenum
6	chr1:168681400-168692400	Weak transcription	Colon Smooth Muscle	Colon
7	chr1:168683600-168696000	Weak transcription	Left Ventricle	heart
8	chr1:168687600-168692200	Weak transcription	Skeletal Muscle Male	skeletal muscle
9	chr1:168687600-168695000	Weak transcription	Fetal Lung	lung
10	chr1:168688000-168691000	Weak transcription	Right Atrium	heart
11	chr1:168688000-168695200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr1:168688200-168692200	Weak transcription	Skeletal Muscle Female	skeletal muscle
13	chr1:168688200-168694800	Enhancers	Fetal Heart	heart
14	chr1:168689000-168692200	Weak transcription	Pancreas	Pancrea
15	chr1:168689000-168697000	Weak transcription	Placenta Amnion	Placenta Amnion
16	chr1:168689200-168690000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr1:168689400-168694200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr1:168689600-168689800	Enhancers	GM12878-XiMat	blood
19	chr1:168689600-168694400	Weak transcription	HMEC	breast
20	chr1:168689600-168695400	Weak transcription	Adipose Nuclei	Adipose

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