Variant report

Variant	rs12737253
Chromosome Location	chr1:168714642-168714643
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs12563398	0.81[AMR][1000 genomes]
rs12567476	0.85[AMR][1000 genomes]
rs12568207	0.81[AMR][1000 genomes]
rs12724380	0.83[AMR][1000 genomes]
rs12728858	0.84[AMR][1000 genomes]
rs12742262	0.84[AMR][1000 genomes]
rs12755391	0.81[AMR][1000 genomes]
rs17569416	0.84[AMR][1000 genomes]
rs1765517	0.86[AMR][1000 genomes]
rs1989300	0.84[AMR][1000 genomes]
rs2206288	0.81[AMR][1000 genomes]
rs2206289	0.81[AMR][1000 genomes]
rs2206290	0.81[AMR][1000 genomes]
rs2223478	0.81[AMR][1000 genomes]
rs2744659	0.81[AMR][1000 genomes]
rs2744661	0.81[AMR][1000 genomes]
rs484025	0.84[AMR][1000 genomes]
rs485109	0.84[AMR][1000 genomes]
rs485855	0.84[AMR][1000 genomes]
rs534139	0.84[AMR][1000 genomes]
rs538714	0.84[AMR][1000 genomes]
rs542198	0.84[AMR][1000 genomes]
rs625712	0.84[AMR][1000 genomes]
rs627872	0.84[AMR][1000 genomes]
rs6427148	0.81[AMR][1000 genomes]
rs655128	0.84[AMR][1000 genomes]
rs656919	0.84[AMR][1000 genomes]
rs6656646	0.81[AMR][1000 genomes]
rs6697889	0.81[AMR][1000 genomes]
rs6701299	0.84[AMR][1000 genomes]
rs734123	0.81[AMR][1000 genomes]
rs7534485	0.81[AMR][1000 genomes]
rs760912	0.81[AMR][1000 genomes]
rs763433	0.84[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869415	chr1:168467284-169153863	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	44 gene(s)	inside rSNPs	diseases
2	nsv831836	chr1:168538779-168716956	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv831847	chr1:168669877-168850129	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:168701800-168720400	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr1:168711200-168724200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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