Variant report

Variant	rs1273739
Chromosome Location	chr6:121462921-121462922
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs10499105	1.00[ASW][hapmap];0.97[LWK][hapmap];0.85[YRI][hapmap]
rs10782210	0.88[AFR][1000 genomes]
rs1273757	0.90[YRI][hapmap];0.94[AFR][1000 genomes]
rs1273758	0.92[ASW][hapmap];0.83[LWK][hapmap]
rs1273759	0.95[YRI][hapmap];0.94[AFR][1000 genomes]
rs1273760	0.95[YRI][hapmap];0.94[AFR][1000 genomes]
rs1273766	0.94[AFR][1000 genomes]
rs1273772	0.94[AFR][1000 genomes]
rs1273774	0.94[AFR][1000 genomes]
rs1273775	0.95[YRI][hapmap];0.94[AFR][1000 genomes]
rs1273776	0.94[AFR][1000 genomes]
rs1314812	0.94[AFR][1000 genomes]
rs1621008	0.94[AFR][1000 genomes]
rs1697446	0.95[YRI][hapmap];0.94[AFR][1000 genomes]
rs17083387	0.90[YRI][hapmap]
rs1948733	0.95[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2173837	0.95[YRI][hapmap];0.91[AFR][1000 genomes]
rs2173838	0.95[YRI][hapmap];0.91[AFR][1000 genomes]
rs2389414	0.92[ASW][hapmap];0.80[YRI][hapmap]
rs4245508	0.92[ASW][hapmap]
rs4458731	0.95[YRI][hapmap];0.88[AFR][1000 genomes]
rs4466276	0.92[ASW][hapmap];0.96[LWK][hapmap];1.00[MEX][hapmap];0.88[MKK][hapmap];0.90[YRI][hapmap]
rs4483022	0.85[YRI][hapmap]
rs4527742	1.00[ASW][hapmap];0.96[LWK][hapmap];0.90[YRI][hapmap];0.82[AFR][1000 genomes]
rs4585603	1.00[ASW][hapmap];0.97[LWK][hapmap];0.90[YRI][hapmap]
rs4946551	0.90[YRI][hapmap]
rs6569179	1.00[ASW][hapmap];0.97[LWK][hapmap];0.95[YRI][hapmap];0.91[AFR][1000 genomes]
rs6569182	0.95[YRI][hapmap];0.91[AFR][1000 genomes]
rs6569183	0.95[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6569184	0.86[AFR][1000 genomes]
rs6569194	1.00[ASW][hapmap];0.97[LWK][hapmap];0.90[YRI][hapmap]
rs6912500	0.90[YRI][hapmap]
rs6916425	0.95[YRI][hapmap];0.89[AFR][1000 genomes]
rs6920459	0.95[YRI][hapmap];0.86[AFR][1000 genomes]
rs6933489	1.00[ASW][hapmap];0.93[LWK][hapmap];0.85[YRI][hapmap]
rs6935039	0.95[YRI][hapmap];0.91[AFR][1000 genomes]
rs706860	0.88[AFR][1000 genomes]
rs73524557	0.94[AFR][1000 genomes]
rs7452947	0.92[ASW][hapmap]
rs7762181	0.90[YRI][hapmap]
rs7762977	0.90[YRI][hapmap];0.82[AFR][1000 genomes]
rs785401	0.94[YRI][hapmap];0.94[AFR][1000 genomes]
rs785403	0.94[AFR][1000 genomes]
rs785404	0.94[AFR][1000 genomes]
rs810826	0.95[YRI][hapmap];0.94[AFR][1000 genomes]
rs811484	1.00[ASW][hapmap];0.97[LWK][hapmap];0.95[YRI][hapmap];0.94[AFR][1000 genomes]
rs813068	0.92[ASW][hapmap];0.87[LWK][hapmap];0.91[YRI][hapmap];0.80[AFR][1000 genomes]
rs905026	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9375015	1.00[ASW][hapmap];0.97[LWK][hapmap];0.90[MKK][hapmap];0.81[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9385188	0.95[YRI][hapmap]
rs9385191	0.91[AFR][1000 genomes]
rs9387932	0.95[YRI][hapmap];0.86[AFR][1000 genomes]
rs9482123	0.81[YRI][hapmap]
rs9490138	0.92[ASW][hapmap];0.81[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023384	chr6:121235867-121683448	Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
2	nsv530527	chr6:121298528-121789855	ZNF genes & repeats Enhancers Weak transcription Strong transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv966656	chr6:121458378-121463465	ZNF genes & repeats Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:121446800-121464600	Weak transcription	Muscle Satellite Cultured Cells	--
2	chr6:121447000-121463200	Weak transcription	Ovary	ovary
3	chr6:121447200-121463000	Weak transcription	Primary hematopoietic stem cells	blood
4	chr6:121447200-121463200	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr6:121447200-121465000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr6:121447200-121473800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
7	chr6:121447200-121474200	Weak transcription	Rectal Mucosa Donor 29	rectum
8	chr6:121447200-121475000	Weak transcription	Primary B cells from cord blood	blood
9	chr6:121447400-121474200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr6:121447600-121473200	Weak transcription	Primary T cells from cord blood	blood
11	chr6:121447800-121465000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr6:121459400-121464400	Weak transcription	HSMM	muscle
13	chr6:121460600-121463200	Weak transcription	Fetal Stomach	stomach
14	chr6:121462400-121464200	ZNF genes & repeats	Dnd41	blood
15	chr6:121462600-121463200	Weak transcription	Gastric	stomach
16	chr6:121462800-121463600	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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