Variant report

Variant	rs12737456
Chromosome Location	chr1:241869657-241869658
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr1:241868961..241870541-chr1:241927631..241929626,2	K562	blood:
2	chr1:241796539..241799251-chr1:241868228..241871889,3	K562	blood:
3	chr1:241861393..241864784-chr1:241868240..241872029,3	K562	blood:
4	chr1:241864491..241866562-chr1:241869052..241871917,4	MCF-7	breast:
5	chr1:241866993..241870450-chr1:241870800..241873707,3	K562	blood:
6	chr1:241861393..241865984-chr1:241866809..241872029,8	K562	blood:
7	chr1:241799109..241806555-chr1:241863719..241873987,19	MCF-7	breast:
8	chr1:241868172..241869866-chr1:241906945..241909756,2	MCF-7	breast:
9	chr1:241868637..241872305-chr1:241874250..241878079,3	K562	blood:

No data

Variant related genes	Relation type
ENSG00000203668	Chromatin interaction
ENSG00000054277	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs12734054	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12734249	0.92[ASN][1000 genomes]
rs12737686	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs34505857	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv918034	chr1:241072791-242005532	Weak transcription Enhancers Active TSS Bivalent/Poised TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	32 gene(s)	inside rSNPs	diseases
2	nsv997966	chr1:241100739-242087629	Active TSS Genic enhancers Flanking Active TSS Strong transcription Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	40 gene(s)	inside rSNPs	diseases
3	nsv1002214	chr1:241458939-242099790	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	37 gene(s)	inside rSNPs	diseases
4	nsv873368	chr1:241533392-242195928	Weak transcription Active TSS Transcr. at gene 5' and 3' Enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	diseases
5	nsv873372	chr1:241690554-242438293	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases
6	nsv948409	chr1:241830086-242489705	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
7	nsv528015	chr1:241865219-242070731	Active TSS Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:241865000-241870200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr1:241866600-241870200	Enhancers	NHEK	skin
3	chr1:241868000-241871600	Enhancers	HMEC	breast
4	chr1:241868800-241871800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr1:241869000-241870600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr1:241869000-241871200	Enhancers	Primary T killer memory cells from peripheral blood	blood
7	chr1:241869000-241871800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr1:241869000-241871800	Enhancers	Hela-S3	cervix
9	chr1:241869200-241871200	Enhancers	Primary T cells fromperipheralblood	blood
10	chr1:241869200-241871200	Enhancers	Primary T helper naive cells from peripheral blood	blood
11	chr1:241869200-241871400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
12	chr1:241869200-241871400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr1:241869200-241872000	Enhancers	Muscle Satellite Cultured Cells	--
14	chr1:241869400-241869800	Enhancers	K562	blood
15	chr1:241869400-241870400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
16	chr1:241869400-241870400	Enhancers	A549	lung
17	chr1:241869400-241870600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
18	chr1:241869400-241870600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
19	chr1:241869400-241870600	Enhancers	Placenta	Placenta
20	chr1:241869400-241870600	Enhancers	Placenta Amnion	Placenta Amnion
21	chr1:241869400-241870800	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
22	chr1:241869400-241871000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
23	chr1:241869400-241871000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
24	chr1:241869400-241871000	Enhancers	Primary T helper cells PMA-I stimulated	--
25	chr1:241869400-241871000	Enhancers	Primary T helper cells fromperipheralblood	blood
26	chr1:241869400-241871000	Enhancers	Fetal Thymus	thymus
27	chr1:241869400-241871200	Enhancers	Breast Myoepithelial Primary Cells	Breast
28	chr1:241869400-241871400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
29	chr1:241869400-241871400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
30	chr1:241869400-241871400	Enhancers	Thymus	Thymus
31	chr1:241869400-241871400	Enhancers	NHDF-Ad	bronchial
32	chr1:241869400-241871400	Enhancers	Osteobl	bone
33	chr1:241869400-241871800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
34	chr1:241869600-241870000	Weak transcription	Esophagus	oesophagus
35	chr1:241869600-241871000	Enhancers	Primary T cells from cord blood	blood
36	chr1:241869600-241871000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
37	chr1:241869600-241871200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
38	chr1:241869600-241871400	Enhancers	HSMM	muscle

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