Variant report

Variant	rs12741770
Chromosome Location	chr1:220130657-220130658
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs12134746	0.84[ASN][1000 genomes]
rs12724773	0.90[EUR][1000 genomes]
rs17006829	1.00[JPT][hapmap]
rs5030752	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs5030754	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs6541124	1.00[JPT][hapmap]
rs6679410	1.00[JPT][hapmap]
rs6690630	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv427930	chr1:220120379-220333434	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	744 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:220128800-220131400	Weak transcription	Duodenum Mucosa	Duodenum
2	chr1:220128800-220131400	Weak transcription	Fetal Intestine Small	intestine
3	chr1:220128800-220132200	Weak transcription	K562	blood
4	chr1:220129200-220145800	Weak transcription	HepG2	liver
5	chr1:220129400-220133000	Weak transcription	Small Intestine	intestine
6	chr1:220130200-220132400	Active TSS	Fetal Intestine Large	intestine

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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