Variant report
| Variant | rs12747641 |
|---|---|
| Chromosome Location | chr1:103142335-103142336 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:1)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | lncRNA name | Chromosome Location | lncRNA alias |
|---|---|---|---|
| 1 | lnc-RNPC3-3 | chr1:103142328-103142403 | XLOC_000322 |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:3)
| rs_ID | r2[population] |
|---|---|
| rs12726148 | 0.91[AMR][1000 genomes];0.88[EUR][1000 genomes] |
| rs7542811 | 0.95[ASN][1000 genomes] |
| rs7543104 | 0.98[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv2753128 | chr1:102843599-103206371 | Active TSS Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Weak transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | diseases |
| 2 | nsv830871 | chr1:103028277-103203177 | Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
| 3 | nsv871559 | chr1:103120262-103216881 | Enhancers Active TSS Weak transcription Bivalent Enhancer | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
| 4 | nsv870690 | chr1:103120262-103228579 | Enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Weak transcription | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
| 5 | nsv462705 | chr1:103123803-103267759 | Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
| 6 | nsv546923 | chr1:103123803-103267759 | Enhancers Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
| 7 | nsv1011070 | chr1:103134161-103159075 | Enhancers Bivalent Enhancer | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
