Variant report

Variant rs12747990
Chromosome Location chr1:151557497-151557498
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:78 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:151521800-151559000 Weak transcription Small Intestine intestine
2 chr1:151533800-151561600 Weak transcription Primary mononuclear cells fromperipheralblood Blood
3 chr1:151535800-151561800 Weak transcription Brain Substantia Nigra brain
4 chr1:151537400-151558400 Weak transcription Fetal Kidney kidney
5 chr1:151548800-151558200 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
6 chr1:151550400-151559800 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
7 chr1:151550800-151557600 Genic enhancers H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
8 chr1:151551800-151557800 Strong transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
9 chr1:151552400-151558200 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
10 chr1:151552600-151559800 Weak transcription H9 Cell Line embryonic stem cell
11 chr1:151552800-151558000 Weak transcription Hela-S3 cervix
12 chr1:151553800-151558200 Weak transcription NHLF lung
13 chr1:151554400-151560000 Weak transcription Fetal Brain Female brain
14 chr1:151554800-151558000 Weak transcription iPS-15b Cell Line embryonic stem cell
15 chr1:151554800-151558000 Weak transcription Aorta Aorta
16 chr1:151554800-151559200 Weak transcription HepG2 liver
17 chr1:151554800-151559800 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
18 chr1:151554800-151560000 Weak transcription iPS-20b Cell Line embryonic stem cell
19 chr1:151554800-151566200 Weak transcription Ovary ovary
20 chr1:151555000-151558000 Weak transcription HUES64 Cell Line embryonic stem cell
21 chr1:151555000-151558400 Weak transcription Primary T regulatory cells fromperipheralblood blood
22 chr1:151555000-151558800 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
23 chr1:151555000-151560200 Enhancers Placenta Placenta
24 chr1:151555000-151568800 Weak transcription Liver Liver
25 chr1:151555200-151559800 Weak transcription H1 Cell Line embryonic stem cell
26 chr1:151555200-151559800 Weak transcription HUES48 Cell Line embryonic stem cell
27 chr1:151555400-151558000 Weak transcription iPS-18 Cell Line embryonic stem cell
28 chr1:151555400-151558000 Weak transcription Duodenum Mucosa Duodenum
29 chr1:151555400-151580800 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
30 chr1:151555600-151566600 Weak transcription Stomach Smooth Muscle stomach
31 chr1:151556000-151558600 Enhancers Adipose Nuclei Adipose
32 chr1:151556000-151558800 Enhancers Muscle Satellite Cultured Cells --
33 chr1:151556200-151557600 Genic enhancers H1 Derived Mesenchymal Stem Cells ES cell derived
34 chr1:151556200-151557800 Enhancers Esophagus oesophagus
35 chr1:151556200-151557800 Enhancers K562 blood
36 chr1:151556200-151558800 Enhancers Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
37 chr1:151556200-151559000 Enhancers Skeletal Muscle Female skeletal muscle
38 chr1:151556200-151559400 Enhancers HMEC breast
39 chr1:151556400-151557800 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
40 chr1:151556400-151558000 Weak transcription Fetal Stomach stomach
41 chr1:151556400-151559800 Weak transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
42 chr1:151556400-151569200 Weak transcription Pancreas Pancrea
43 chr1:151556600-151558000 Genic enhancers Fetal Intestine Small intestine
44 chr1:151556600-151558600 Enhancers hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
45 chr1:151556600-151558800 Enhancers Placenta Amnion Placenta Amnion
46 chr1:151556600-151559200 Enhancers Stomach Mucosa stomach
47 chr1:151556600-151559600 Enhancers Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
48 chr1:151556600-151560000 Enhancers ES-I3 Cell Line embryonic stem cell
49 chr1:151556600-151566600 Weak transcription Rectal Mucosa Donor 29 rectum
50 chr1:151556800-151557600 Enhancers H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived

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