Variant report

Variant	rs1274902
Chromosome Location	chr11:101865268-101865269
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10750624	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10791544	0.85[AFR][1000 genomes];0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10791547	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10895222	0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10895229	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10895233	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1274899	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1274901	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1372413	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1441928	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1470195	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1596119	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1661412	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1783741	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1783742	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2508314	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3740931	0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4363558	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7112084	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7114321	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7942191	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7942197	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs880474	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs930469	0.82[AMR][1000 genomes]
rs976735	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3362945	chr11:101736547-102114246	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
2	nsv898333	chr11:101832670-102079986	Active TSS Flanking Bivalent TSS/Enh Enhancers Weak transcription Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:101787400-101866000	Weak transcription	Stomach Smooth Muscle	stomach
2	chr11:101812200-101866600	Weak transcription	Fetal Brain Male	brain
3	chr11:101821200-101878400	Weak transcription	Brain Anterior Caudate	brain
4	chr11:101827200-101883400	Weak transcription	Aorta	Aorta
5	chr11:101834600-101876000	Weak transcription	Fetal Lung	lung
6	chr11:101842600-101871000	Weak transcription	Brain Substantia Nigra	brain
7	chr11:101847600-101870800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr11:101851600-101878200	Weak transcription	HUVEC	blood vessel
9	chr11:101851800-101870600	Weak transcription	Brain Cingulate Gyrus	brain
10	chr11:101852200-101874800	Weak transcription	Brain Hippocampus Middle	brain
11	chr11:101852800-101876000	Weak transcription	Sigmoid Colon	Sigmoid Colon
12	chr11:101853800-101868200	Weak transcription	Left Ventricle	heart
13	chr11:101854200-101874800	Weak transcription	Brain Inferior Temporal Lobe	brain
14	chr11:101854400-101878200	Weak transcription	Colon Smooth Muscle	Colon
15	chr11:101854800-101877600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr11:101855200-101874000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
17	chr11:101858400-101878200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr11:101859200-101869400	Weak transcription	Esophagus	oesophagus
19	chr11:101859400-101878200	Weak transcription	NHLF	lung
20	chr11:101859600-101878400	Weak transcription	Skeletal Muscle Male	skeletal muscle
21	chr11:101862800-101866600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
22	chr11:101863600-101878200	Weak transcription	Rectal Smooth Muscle	rectum
23	chr11:101864000-101869600	Weak transcription	Rectal Mucosa Donor 29	rectum
24	chr11:101864000-101878200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
25	chr11:101864200-101865600	Weak transcription	Pancreatic Islets	Pancreatic Islet
26	chr11:101864200-101866200	Weak transcription	Ovary	ovary
27	chr11:101864200-101867200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
28	chr11:101864200-101868200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
29	chr11:101864200-101868200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
30	chr11:101864200-101868800	Enhancers	HepG2	liver
31	chr11:101864200-101869800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
32	chr11:101864200-101878200	Weak transcription	Duodenum Smooth Muscle	Duodenum
33	chr11:101864200-101878200	Weak transcription	Fetal Brain Female	brain
34	chr11:101864200-101878400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
35	chr11:101864400-101872600	Weak transcription	Brain Angular Gyrus	brain
36	chr11:101864400-101872800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
37	chr11:101864800-101865400	Enhancers	Liver	Liver
38	chr11:101865200-101869200	Strong transcription	Adipose Nuclei	Adipose

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