Variant report

Variant	rs12754151
Chromosome Location	chr1:104693341-104693342
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 64 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs10494009	0.83[EUR][1000 genomes]
rs11185382	0.88[ASN][1000 genomes]
rs12723894	0.83[EUR][1000 genomes]
rs12726311	0.83[EUR][1000 genomes]
rs12731134	0.83[EUR][1000 genomes]
rs12739485	0.83[EUR][1000 genomes]
rs12741692	0.83[EUR][1000 genomes]
rs12747868	0.83[EUR][1000 genomes]
rs12747997	0.83[EUR][1000 genomes]
rs12755626	0.83[EUR][1000 genomes]
rs17019555	0.92[ASN][1000 genomes]
rs17019678	0.83[EUR][1000 genomes]
rs17019758	1.00[CEU][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes]
rs17020242	0.83[EUR][1000 genomes]
rs17020850	0.83[EUR][1000 genomes]
rs1887911	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs1887912	0.83[EUR][1000 genomes]
rs1887913	0.83[EUR][1000 genomes]
rs1887914	0.83[EUR][1000 genomes]
rs1928332	0.83[EUR][1000 genomes]
rs1928333	0.83[EUR][1000 genomes]
rs1932467	1.00[ASN][1000 genomes]
rs2094634	0.83[EUR][1000 genomes]
rs34020934	0.83[EUR][1000 genomes]
rs34116274	0.83[EUR][1000 genomes]
rs34292642	0.83[EUR][1000 genomes]
rs34292719	0.83[EUR][1000 genomes]
rs34375191	0.83[EUR][1000 genomes]
rs34396730	0.83[EUR][1000 genomes]
rs34413358	0.83[EUR][1000 genomes]
rs34472079	0.83[EUR][1000 genomes]
rs34536383	0.83[EUR][1000 genomes]
rs34610575	0.83[EUR][1000 genomes]
rs34861188	0.83[EUR][1000 genomes]
rs35090280	0.83[EUR][1000 genomes]
rs35137991	0.83[EUR][1000 genomes]
rs35300832	0.83[EUR][1000 genomes]
rs35697462	0.83[EUR][1000 genomes]
rs35719725	0.83[EUR][1000 genomes]
rs35726812	0.83[EUR][1000 genomes]
rs35976293	0.83[EUR][1000 genomes]
rs36012007	0.83[EUR][1000 genomes]
rs61091045	0.83[EUR][1000 genomes]
rs6657905	0.83[EUR][1000 genomes]
rs6689529	0.83[EUR][1000 genomes]
rs68177263	0.80[ASN][1000 genomes]
rs71669406	0.83[EUR][1000 genomes]
rs71669407	0.83[EUR][1000 genomes]
rs71669410	0.83[EUR][1000 genomes]
rs7514438	0.83[EUR][1000 genomes]
rs7515655	0.83[EUR][1000 genomes]
rs7552164	0.83[EUR][1000 genomes]
rs7556168	0.83[EUR][1000 genomes]
rs9659160	0.83[EUR][1000 genomes]
rs9662118	0.83[EUR][1000 genomes]
rs9662847	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014507	chr1:104307231-104784753	Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1012931	chr1:104322484-104778961	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv872072	chr1:104470622-105076810	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv1010903	chr1:104483363-105468941	Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv872073	chr1:104502333-104719055	Enhancers ZNF genes & repeats Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	esv1839044	chr1:104576359-104707906	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
7	nsv482341	chr1:104589525-104731812	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
8	esv999353	chr1:104689437-104699435	Enhancers	TF binding region CpG island	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:104691000-104693600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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