Variant report

Variant	rs12755164
Chromosome Location	chr1:73635891-73635892
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10789358	0.94[AFR][1000 genomes]
rs10890011	0.80[AFR][1000 genomes]
rs10890016	0.93[AFR][1000 genomes]
rs11210166	0.96[AFR][1000 genomes]
rs11210167	0.80[AFR][1000 genomes]
rs11210170	0.80[AFR][1000 genomes]
rs11210174	0.95[AFR][1000 genomes]
rs12037338	0.91[AFR][1000 genomes]
rs6703953	0.92[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1005356	chr1:73542786-74124065	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv870774	chr1:73560811-73706449	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	esv2757736	chr1:73613099-73775684	Enhancers Flanking Active TSS Weak transcription Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	esv2758942	chr1:73613099-73775684	Enhancers Weak transcription Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv546569	chr1:73634013-73647909	Enhancers Weak transcription Flanking Active TSS	n/a	n/a	inside rSNPs	n/a
6	nsv870886	chr1:73634013-73790683	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	n/a
7	esv1658901	chr1:73635888-73635892	Weak transcription Enhancers	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:73628400-73641800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr1:73635200-73636600	Enhancers	HUES6 Cell Line	embryonic stem cell
3	chr1:73635400-73636000	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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