Variant report

Variant	rs12758752
Chromosome Location	chr1:91908225-91908226
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs11799814	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12060889	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12717797	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1508586	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1508587	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1876592	0.86[EUR][1000 genomes]
rs58884787	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6683272	0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6683496	0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs71668074	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7513482	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7522651	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7526693	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7526795	0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7526972	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7535665	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7540260	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7542806	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7543080	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949516	chr1:91644418-92109261	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	nsv1009560	chr1:91897078-92270781	Enhancers Strong transcription Bivalent Enhancer Weak transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs12758752	CDC7	Cis_1M	lymphoblastoid	RTeQTL
rs12758752	CDC7	cis	Skin Sun Exposed Lower leg	GTEx

Chromatin state (count:0 , 50 per page) page:

No data

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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