Variant report

Variant	rs12765500
Chromosome Location	chr10:89679580-89679581
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:89679106..89681199-chr10:89681260..89684202,3	K562	blood:
2	chr10:89673644..89678140-chr10:89679296..89683460,5	K562	blood:
3	chr10:89621607..89624056-chr10:89678567..89681006,2	MCF-7	breast:
4	chr10:89671146..89673722-chr10:89679466..89681540,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000171862	Chromatin interaction
ENSG00000227268	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1793518	chr10:89625582-89733420	Weak transcription Strong transcription Enhancers Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	esv1798260	chr10:89625582-89733420	Weak transcription Genic enhancers Strong transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv1044043	chr10:89678935-89701069	Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:89647000-89711200	Weak transcription	Stomach Smooth Muscle	stomach
2	chr10:89648000-89683000	Weak transcription	Rectal Smooth Muscle	rectum
3	chr10:89663600-89686400	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr10:89663600-89687400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr10:89663800-89725400	Weak transcription	Colonic Mucosa	Colon
6	chr10:89664000-89681800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr10:89666000-89712400	Weak transcription	Fetal Brain Male	brain
8	chr10:89666600-89682800	Weak transcription	Placenta	Placenta
9	chr10:89671600-89682800	Weak transcription	Spleen	Spleen
10	chr10:89672000-89681600	Weak transcription	Aorta	Aorta
11	chr10:89673400-89679800	Genic enhancers	Dnd41	blood
12	chr10:89673600-89726000	Weak transcription	Brain Substantia Nigra	brain
13	chr10:89674000-89685600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr10:89674200-89695200	Weak transcription	Brain Cingulate Gyrus	brain
15	chr10:89674200-89711000	Weak transcription	HepG2	liver
16	chr10:89674600-89682600	Weak transcription	Cortex derived primary cultured neurospheres	brain
17	chr10:89674600-89684400	Weak transcription	Fetal Kidney	kidney
18	chr10:89674600-89686400	Weak transcription	HSMMtube	muscle
19	chr10:89674600-89687000	Weak transcription	Rectal Mucosa Donor 29	rectum
20	chr10:89674600-89689800	Weak transcription	Fetal Lung	lung
21	chr10:89674600-89695600	Weak transcription	Fetal Muscle Trunk	muscle
22	chr10:89674800-89682200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
23	chr10:89674800-89724400	Weak transcription	Fetal Brain Female	brain
24	chr10:89675000-89679800	Enhancers	Primary T helper cells PMA-I stimulated	--
25	chr10:89675200-89679800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
26	chr10:89675400-89679600	Enhancers	Primary T cells from cord blood	blood
27	chr10:89675400-89681200	Weak transcription	Lung	lung
28	chr10:89675400-89681600	Weak transcription	Ovary	ovary
29	chr10:89675400-89686400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
30	chr10:89675400-89726000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr10:89675600-89680200	Weak transcription	Fetal Intestine Small	intestine
32	chr10:89675600-89680400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
33	chr10:89675600-89681600	Weak transcription	Right Ventricle	heart
34	chr10:89675600-89681600	Weak transcription	HSMM	muscle
35	chr10:89675600-89681800	Weak transcription	H1 Cell Line	embryonic stem cell
36	chr10:89675600-89682800	Weak transcription	Pancreas	Pancrea
37	chr10:89675600-89682800	Weak transcription	Sigmoid Colon	Sigmoid Colon
38	chr10:89675600-89683800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
39	chr10:89675600-89685400	Weak transcription	Duodenum Mucosa	Duodenum
40	chr10:89675600-89686200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
41	chr10:89675600-89687200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
42	chr10:89675600-89705000	Weak transcription	Fetal Stomach	stomach
43	chr10:89675600-89705200	Weak transcription	Esophagus	oesophagus
44	chr10:89675800-89682000	Weak transcription	Colon Smooth Muscle	Colon
45	chr10:89676000-89681400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
46	chr10:89676000-89681600	Weak transcription	HUES6 Cell Line	embryonic stem cell
47	chr10:89676000-89681800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
48	chr10:89676000-89682400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
49	chr10:89676200-89680400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
50	chr10:89676200-89681800	Weak transcription	HUES48 Cell Line	embryonic stem cell

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