Variant report

Variant	rs12765660
Chromosome Location	chr10:116268639-116268640
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:116266412..116268735-chr10:116284474..116287074,3	MCF-7	breast:
2	chr10:116103065..116105918-chr10:116267624..116269168,2	MCF-7	breast:
3	chr10:116265784..116270126-chr10:116277666..116281304,6	MCF-7	breast:
4	chr10:116265208..116269049-chr10:116284578..116287901,5	MCF-7	breast:
5	chr10:115932328..115934927-chr10:116267650..116269173,2	MCF-7	breast:
6	chr10:116265831..116269347-chr10:116277176..116281462,5	MCF-7	breast:

Variant related genes	Relation type
ENSG00000238742	Chromatin interaction
ENSG00000099204	Chromatin interaction
ENSG00000165813	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs1080709	0.82[CEU][hapmap]
rs12765701	0.88[CEU][hapmap];0.91[YRI][hapmap];0.98[AFR][1000 genomes];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12771331	0.85[EUR][1000 genomes]
rs12781910	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17091953	1.00[ASW][hapmap];0.87[CEU][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];0.92[TSI][hapmap];0.92[YRI][hapmap];0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17091955	1.00[ASW][hapmap];0.82[CEU][hapmap];0.93[GIH][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.92[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs17091968	0.88[CEU][hapmap];0.92[YRI][hapmap];1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17091994	0.88[CEU][hapmap];0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs17091996	0.88[CEU][hapmap];0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2497669	1.00[CHD][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1037308	chr10:116141946-116519765	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
2	nsv540780	chr10:116141946-116519765	Enhancers Genic enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:86 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:116225600-116278800	Weak transcription	HSMM	muscle
2	chr10:116243000-116286200	Weak transcription	Spleen	Spleen
3	chr10:116258000-116271400	Enhancers	Stomach Mucosa	stomach
4	chr10:116259600-116272000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr10:116259800-116276800	Weak transcription	Thymus	Thymus
6	chr10:116260000-116268800	Weak transcription	Gastric	stomach
7	chr10:116260000-116269800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
8	chr10:116260000-116272800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
9	chr10:116260200-116268800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr10:116260400-116272800	Enhancers	Primary T helper naive cells from peripheral blood	blood
11	chr10:116260800-116269600	Enhancers	Primary T killer memory cells from peripheral blood	blood
12	chr10:116261200-116279400	Weak transcription	GM12878-XiMat	blood
13	chr10:116262600-116274800	Weak transcription	Fetal Thymus	thymus
14	chr10:116263000-116269000	Weak transcription	Primary hematopoietic stem cells	blood
15	chr10:116263000-116269000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
16	chr10:116263400-116269000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr10:116264000-116271600	Enhancers	Primary T helper cells fromperipheralblood	blood
18	chr10:116264200-116268800	Enhancers	Primary T helper cells PMA-I stimulated	--
19	chr10:116264400-116269400	Enhancers	Breast Myoepithelial Primary Cells	Breast
20	chr10:116264600-116269200	Enhancers	Rectal Mucosa Donor 31	rectum
21	chr10:116265000-116271800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
22	chr10:116265400-116271600	Weak transcription	Psoas Muscle	Psoas
23	chr10:116265400-116279400	Weak transcription	Rectal Smooth Muscle	rectum
24	chr10:116265600-116274800	Weak transcription	H9 Cell Line	embryonic stem cell
25	chr10:116265600-116275200	Weak transcription	Cortex derived primary cultured neurospheres	brain
26	chr10:116265800-116268800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
27	chr10:116266000-116275000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
28	chr10:116266000-116276600	Weak transcription	Brain Inferior Temporal Lobe	brain
29	chr10:116266600-116269800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
30	chr10:116267000-116269800	Enhancers	Ovary	ovary
31	chr10:116267200-116269000	Enhancers	Adipose Nuclei	Adipose
32	chr10:116267200-116269600	Genic enhancers	Left Ventricle	heart
33	chr10:116267400-116269600	Genic enhancers	Primary T cells from cord blood	blood
34	chr10:116267600-116268800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
35	chr10:116267600-116268800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
36	chr10:116267600-116268800	Weak transcription	Stomach Smooth Muscle	stomach
37	chr10:116267600-116269000	Enhancers	Fetal Heart	heart
38	chr10:116267600-116274800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
39	chr10:116267600-116275000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
40	chr10:116267600-116278800	Weak transcription	Colonic Mucosa	Colon
41	chr10:116267600-116279200	Weak transcription	Aorta	Aorta
42	chr10:116267800-116268800	Weak transcription	Esophagus	oesophagus
43	chr10:116267800-116269000	Enhancers	Hela-S3	cervix
44	chr10:116267800-116269400	Strong transcription	Lung	lung
45	chr10:116267800-116271400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
46	chr10:116267800-116271600	Weak transcription	HMEC	breast
47	chr10:116267800-116271600	Weak transcription	NHEK	skin
48	chr10:116267800-116273200	Weak transcription	Pancreas	Pancrea
49	chr10:116267800-116274800	Weak transcription	HUES48 Cell Line	embryonic stem cell
50	chr10:116267800-116278400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

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