Variant report

Variant	rs12768701
Chromosome Location	chr10:53795780-53795781
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs12763723	0.98[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12766436	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12768368	0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1904006	0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045692	chr10:53301450-54086823	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	esv2750961	chr10:53726294-54010594	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv532194	chr10:53746620-54735550	Weak transcription Genic enhancers Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
4	nsv1040754	chr10:53758289-53845925	Enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:53780200-53797800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr10:53793600-53797800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr10:53794200-53795800	Transcr. at gene 5' and 3'	iPS-20b Cell Line	embryonic stem cell
4	chr10:53794200-53796000	Transcr. at gene 5' and 3'	iPS-18 Cell Line	embryonic stem cell
5	chr10:53794400-53795800	Transcr. at gene 5' and 3'	H9 Cell Line	embryonic stem cell
6	chr10:53794600-53795800	Transcr. at gene 5' and 3'	HUES64 Cell Line	embryonic stem cell
7	chr10:53794600-53796000	Transcr. at gene 5' and 3'	iPS-15b Cell Line	embryonic stem cell
8	chr10:53794600-53796200	Active TSS	ES-I3 Cell Line	embryonic stem cell
9	chr10:53794600-53798400	Transcr. at gene 5' and 3'	HUES6 Cell Line	embryonic stem cell
10	chr10:53794600-53799600	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr10:53794600-53799800	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr10:53795200-53796000	Transcr. at gene 5' and 3'	H1 Cell Line	embryonic stem cell
13	chr10:53795200-53796000	Transcr. at gene 5' and 3'	HUES48 Cell Line	embryonic stem cell
14	chr10:53795200-53800000	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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