Variant report

Variant	rs1276904
Chromosome Location	chr6:82417353-82417354
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs1014901	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1145862	0.88[EUR][1000 genomes]
rs1145864	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1145865	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1145866	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1276869	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1276884	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1276886	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1276895	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1276896	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13217375	0.83[ASN][1000 genomes]
rs194885	0.91[AFR][1000 genomes]
rs194893	0.84[AFR][1000 genomes]
rs194905	0.84[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1027683	chr6:82408186-82426855	Flanking Active TSS Enhancers Weak transcription Active TSS	n/a	n/a	inside rSNPs	n/a
2	nsv1025966	chr6:82409797-82433273	Weak transcription Enhancers Flanking Active TSS Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
3	nsv1032896	chr6:82409797-82436605	Weak transcription Enhancers Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a
4	nsv1017529	chr6:82411355-82442277	Weak transcription Enhancers Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:82413800-82417400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr6:82415200-82417600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr6:82415200-82417600	Weak transcription	HUES6 Cell Line	embryonic stem cell
4	chr6:82415200-82417600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
5	chr6:82415600-82417600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr6:82415800-82417600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
7	chr6:82416600-82419800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr6:82417000-82418800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr6:82417000-82420600	Enhancers	HUES48 Cell Line	embryonic stem cell
10	chr6:82417200-82417400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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