Variant report

Variant	rs12770094
Chromosome Location	chr10:43311489-43311490
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 70 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs1008751	0.93[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10466247	0.86[ASN][1000 genomes]
rs10793636	0.87[ASN][1000 genomes]
rs10793638	0.84[ASN][1000 genomes]
rs10900268	0.86[ASN][1000 genomes]
rs10900273	0.84[ASN][1000 genomes]
rs10900276	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10900279	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10900280	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11239774	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11239781	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11239784	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11239785	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11239787	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12241247	0.84[ASN][1000 genomes]
rs1539292	0.85[AFR][1000 genomes];0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1539293	0.91[AFR][1000 genomes];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1539294	0.91[AFR][1000 genomes];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1575039	0.86[AFR][1000 genomes];0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2142985	0.91[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2419111	0.87[ASN][1000 genomes]
rs2419112	0.92[AFR][1000 genomes];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs34081555	0.86[ASN][1000 genomes]
rs34867211	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs35580408	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3758514	0.92[AFR][1000 genomes];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3758516	0.82[ASN][1000 genomes]
rs3982211	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4379783	0.83[ASN][1000 genomes]
rs4949033	0.85[ASN][1000 genomes]
rs4949035	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6593491	0.80[ASN][1000 genomes]
rs6593492	0.86[ASN][1000 genomes]
rs6593494	0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6593495	0.91[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6593496	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6593498	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6593499	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7069774	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7074877	0.92[AFR][1000 genomes];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7086238	0.91[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7089449	0.90[AFR][1000 genomes];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7091406	0.82[ASN][1000 genomes]
rs7100307	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7894010	0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7895163	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7895230	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7896943	0.91[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7901385	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7909445	0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7922246	0.85[ASN][1000 genomes]
rs7922559	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7923351	0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7923890	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9326544	0.92[AFR][1000 genomes];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:15 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv550672	chr10:42753190-43441729	Bivalent Enhancer Genic enhancers Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv533331	chr10:42830221-43356410	ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
3	nsv1042764	chr10:42846383-43511712	Flanking Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
4	nsv1050394	chr10:42890663-43604956	Enhancers Weak transcription Active TSS Bivalent Enhancer Strong transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
5	nsv540573	chr10:42890663-43604956	Strong transcription Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
6	nsv534548	chr10:42890664-43729688	Weak transcription Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
7	esv2758216	chr10:42965131-43510191	Flanking Active TSS Enhancers Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer Weak transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
8	esv2759746	chr10:42965131-43510191	Weak transcription Bivalent Enhancer Bivalent/Poised TSS Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Enhancers Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
9	esv2757381	chr10:43104068-43352995	Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
10	esv34929	chr10:43116194-43329770	Weak transcription Bivalent Enhancer Strong transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
11	nsv895076	chr10:43234432-43326627	Active TSS Strong transcription Weak transcription Bivalent/Poised TSS Flanking Active TSS Enhancers Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
12	nsv1047838	chr10:43234590-43379219	Active TSS Flanking Active TSS Weak transcription Strong transcription Enhancers Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
13	nsv430159	chr10:43291894-43946294	Flanking Active TSS Enhancers Active TSS Strong transcription Weak transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	92 gene(s)	inside rSNPs	diseases
14	nsv947891	chr10:43299039-43319274	Strong transcription Weak transcription ZNF genes & repeats Genic enhancers Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
15	esv14695	chr10:43301539-43355457	Weak transcription Enhancers Strong transcription Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:43279800-43324000	Strong transcription	Liver	Liver
2	chr10:43279800-43328200	Strong transcription	Primary T helper cells fromperipheralblood	blood
3	chr10:43293200-43332400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr10:43294400-43311800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr10:43294600-43322800	Weak transcription	Stomach Mucosa	stomach
6	chr10:43295600-43311800	Weak transcription	Pancreas	Pancrea
7	chr10:43296800-43311800	Weak transcription	Colonic Mucosa	Colon
8	chr10:43298800-43313000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
9	chr10:43299600-43318600	Weak transcription	Placenta Amnion	Placenta Amnion
10	chr10:43299800-43312400	Weak transcription	HSMMtube	muscle
11	chr10:43299800-43313000	Weak transcription	Brain Cingulate Gyrus	brain
12	chr10:43300000-43312800	Weak transcription	Fetal Brain Male	brain
13	chr10:43300000-43318000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
14	chr10:43301600-43323000	Weak transcription	HMEC	breast
15	chr10:43301800-43318000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
16	chr10:43301800-43325800	Weak transcription	NHLF	lung
17	chr10:43302600-43312800	Weak transcription	Fetal Kidney	kidney
18	chr10:43302800-43313000	Weak transcription	Brain Hippocampus Middle	brain
19	chr10:43303000-43317800	Weak transcription	NH-A	brain
20	chr10:43303200-43311800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
21	chr10:43303200-43311800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
22	chr10:43303200-43313000	Weak transcription	Brain Substantia Nigra	brain
23	chr10:43303200-43313200	Weak transcription	Right Ventricle	heart
24	chr10:43303200-43322200	Weak transcription	Psoas Muscle	Psoas
25	chr10:43303400-43312400	Weak transcription	Left Ventricle	heart
26	chr10:43303400-43313000	Weak transcription	Brain Inferior Temporal Lobe	brain
27	chr10:43303400-43313000	Weak transcription	Rectal Smooth Muscle	rectum
28	chr10:43303600-43311800	Weak transcription	Osteobl	bone
29	chr10:43303600-43325800	Weak transcription	Colon Smooth Muscle	Colon
30	chr10:43303600-43332200	Weak transcription	NHDF-Ad	bronchial
31	chr10:43303800-43314000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
32	chr10:43304600-43323000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
33	chr10:43305800-43311800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
34	chr10:43305800-43313000	Weak transcription	Brain Anterior Caudate	brain
35	chr10:43306200-43311800	Weak transcription	HUVEC	blood vessel
36	chr10:43306400-43311800	Weak transcription	Sigmoid Colon	Sigmoid Colon
37	chr10:43306400-43311800	Weak transcription	Hela-S3	cervix
38	chr10:43306400-43312400	Weak transcription	Placenta	Placenta
39	chr10:43306400-43320000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
40	chr10:43306800-43311800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
41	chr10:43308200-43311600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
42	chr10:43308200-43311800	Weak transcription	H9 Cell Line	embryonic stem cell
43	chr10:43308200-43311800	Weak transcription	HUES48 Cell Line	embryonic stem cell
44	chr10:43308200-43311800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
45	chr10:43308200-43311800	Weak transcription	Primary T cells fromperipheralblood	blood
46	chr10:43308200-43312000	Weak transcription	Skeletal Muscle Male	skeletal muscle
47	chr10:43308200-43312400	Weak transcription	Fetal Lung	lung
48	chr10:43308200-43313000	Weak transcription	Aorta	Aorta
49	chr10:43308200-43314000	Weak transcription	Muscle Satellite Cultured Cells	--
50	chr10:43308200-43328200	Strong transcription	Monocytes-CD14+_RO01746	blood

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