Variant report

Variant	rs12772058
Chromosome Location	chr10:18800411-18800412
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10508562	0.89[EUR][1000 genomes]
rs10508563	0.87[EUR][1000 genomes]
rs11597110	0.82[EUR][1000 genomes]
rs12764334	0.86[EUR][1000 genomes]
rs12764398	0.86[EUR][1000 genomes]
rs12773254	0.82[EUR][1000 genomes]
rs12774593	0.86[EUR][1000 genomes]
rs12779641	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1880681	0.81[EUR][1000 genomes]
rs2228645	0.85[EUR][1000 genomes]
rs4314963	0.87[EUR][1000 genomes]
rs56386348	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv550042	chr10:18683267-18994583	ZNF genes & repeats Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs12772058	ARL5B	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:18732400-18801600	Weak transcription	Pancreas	Pancrea
2	chr10:18775600-18800600	Weak transcription	Fetal Intestine Large	intestine
3	chr10:18776200-18809400	Weak transcription	Right Ventricle	heart
4	chr10:18776200-18812200	Weak transcription	Right Atrium	heart
5	chr10:18778600-18818200	Weak transcription	Fetal Intestine Small	intestine
6	chr10:18779600-18803200	Weak transcription	Stomach Smooth Muscle	stomach
7	chr10:18781000-18803200	Weak transcription	Sigmoid Colon	Sigmoid Colon
8	chr10:18785400-18808400	Weak transcription	Colon Smooth Muscle	Colon
9	chr10:18786800-18802000	Weak transcription	Rectal Mucosa Donor 29	rectum
10	chr10:18787400-18807400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr10:18787400-18808200	Weak transcription	Cortex derived primary cultured neurospheres	brain
12	chr10:18787400-18810200	Weak transcription	Brain Inferior Temporal Lobe	brain
13	chr10:18787600-18803200	Weak transcription	Brain Cingulate Gyrus	brain
14	chr10:18788000-18801800	Weak transcription	Fetal Stomach	stomach
15	chr10:18788200-18808400	Weak transcription	Duodenum Smooth Muscle	Duodenum
16	chr10:18788200-18809600	Weak transcription	Primary hematopoietic stem cells	blood
17	chr10:18789800-18807800	Weak transcription	Rectal Mucosa Donor 31	rectum
18	chr10:18790600-18802000	Weak transcription	Left Ventricle	heart
19	chr10:18790800-18800600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
20	chr10:18790800-18801600	Weak transcription	Liver	Liver
21	chr10:18791000-18807200	Weak transcription	Brain Anterior Caudate	brain
22	chr10:18792400-18825400	Weak transcription	Skeletal Muscle Female	skeletal muscle
23	chr10:18794000-18818400	Weak transcription	Fetal Brain Male	brain
24	chr10:18795000-18800600	Weak transcription	Ovary	ovary
25	chr10:18795000-18801400	Weak transcription	Fetal Lung	lung
26	chr10:18795000-18803200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
27	chr10:18795000-18807200	Weak transcription	Aorta	Aorta
28	chr10:18795400-18800800	Weak transcription	Fetal Heart	heart
29	chr10:18795600-18801600	Weak transcription	Pancreatic Islets	Pancreatic Islet
30	chr10:18798400-18801600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
31	chr10:18798800-18801200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
32	chr10:18799800-18803400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
33	chr10:18799800-18825200	Weak transcription	Colonic Mucosa	Colon
34	chr10:18800000-18801600	Weak transcription	Skeletal Muscle Male	skeletal muscle
35	chr10:18800200-18801400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
36	chr10:18800200-18826800	Weak transcription	Brain Substantia Nigra	brain
37	chr10:18800400-18827000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

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