Variant report

Variant	rs1277346
Chromosome Location	chr6:24406950-24406951
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:24400759..24404961-chr6:24405497..24410292,7	MCF-7	breast:
2	chr6:24282520..24284715-chr6:24405070..24407671,2	MCF-7	breast:
3	chr6:24404630..24407333-chr6:24559685..24561436,2	K562	blood:
4	chr6:24400786..24404823-chr6:24404929..24410869,7	K562	blood:

Variant related genes	Relation type
ENSG00000124532	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs1742280	0.82[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs1772253	0.91[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs2753922	0.97[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs2793422	0.97[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs6456612	0.80[ASN][1000 genomes]
rs793652	0.97[AFR][1000 genomes];0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs793654	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs793657	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs793679	0.85[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs793690	0.82[AFR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1026638	chr6:24347972-24475300	Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:24404000-24408000	Weak transcription	Aorta	Aorta
2	chr6:24404000-24408000	Weak transcription	Lung	lung
3	chr6:24404000-24408000	Weak transcription	Spleen	Spleen
4	chr6:24404000-24408800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr6:24404000-24413000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr6:24404200-24413000	Weak transcription	Gastric	stomach
7	chr6:24404400-24407600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
8	chr6:24404400-24412000	Weak transcription	Colonic Mucosa	Colon
9	chr6:24404400-24412400	Weak transcription	Fetal Brain Male	brain
10	chr6:24404400-24412800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
11	chr6:24404400-24412800	Weak transcription	Placenta Amnion	Placenta Amnion
12	chr6:24404400-24413000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr6:24404600-24407600	Weak transcription	Primary monocytes fromperipheralblood	blood
14	chr6:24404600-24407600	Weak transcription	Primary neutrophils fromperipheralblood	blood
15	chr6:24404600-24407600	Weak transcription	Primary T cells fromperipheralblood	blood
16	chr6:24404600-24407600	Weak transcription	Brain Angular Gyrus	brain
17	chr6:24404600-24407600	Weak transcription	Placenta	Placenta
18	chr6:24404600-24407800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr6:24404600-24407800	Weak transcription	Rectal Mucosa Donor 31	rectum
20	chr6:24404600-24407800	Weak transcription	HSMMtube	muscle
21	chr6:24404600-24407800	Weak transcription	NHLF	lung
22	chr6:24404600-24408000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
23	chr6:24404600-24408000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
24	chr6:24404600-24408000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
25	chr6:24404600-24408000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
26	chr6:24404600-24408000	Weak transcription	Left Ventricle	heart
27	chr6:24404600-24408000	Weak transcription	Ovary	ovary
28	chr6:24404600-24408000	Weak transcription	Stomach Smooth Muscle	stomach
29	chr6:24404600-24408800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
30	chr6:24404600-24408800	Weak transcription	Brain Cingulate Gyrus	brain
31	chr6:24404600-24408800	Weak transcription	NHDF-Ad	bronchial
32	chr6:24404600-24412400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
33	chr6:24404600-24412600	Weak transcription	Brain Substantia Nigra	brain
34	chr6:24404600-24412600	Weak transcription	Stomach Mucosa	stomach
35	chr6:24404600-24412600	Weak transcription	Thymus	Thymus
36	chr6:24404600-24413000	Weak transcription	Rectal Smooth Muscle	rectum
37	chr6:24404600-24413000	Weak transcription	Small Intestine	intestine
38	chr6:24404600-24413600	Weak transcription	Cortex derived primary cultured neurospheres	brain
39	chr6:24404600-24437400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
40	chr6:24404800-24407400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
41	chr6:24404800-24407600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
42	chr6:24404800-24407600	Weak transcription	Adipose Nuclei	Adipose
43	chr6:24404800-24408000	Weak transcription	HUVEC	blood vessel
44	chr6:24404800-24408200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
45	chr6:24404800-24408600	Weak transcription	Muscle Satellite Cultured Cells	--
46	chr6:24404800-24412400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
47	chr6:24405000-24407600	Weak transcription	Primary T cells from cord blood	blood
48	chr6:24405000-24408200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
49	chr6:24405000-24427600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
50	chr6:24405200-24407000	Strong transcription	Fetal Intestine Large	intestine

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