Variant report

Variant	rs12776375
Chromosome Location	chr10:53859805-53859806
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10508968	0.96[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11591515	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11592264	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11594206	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12570780	0.91[EUR][1000 genomes]
rs12774141	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12782150	0.96[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs17562140	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17562565	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17642863	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17643002	0.96[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2126759	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs34173878	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs34178098	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs34261122	0.91[EUR][1000 genomes]
rs34389565	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs34447589	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs34733197	0.94[EUR][1000 genomes]
rs35222522	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs57169351	0.89[EUR][1000 genomes]
rs71490904	0.96[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs71490905	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045692	chr10:53301450-54086823	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	esv2750961	chr10:53726294-54010594	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv532194	chr10:53746620-54735550	Weak transcription Genic enhancers Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
4	nsv467198	chr10:53843374-53923411	Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
5	nsv550875	chr10:53843374-53923411	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:53853000-53861600	Weak transcription	HUES6 Cell Line	embryonic stem cell
2	chr10:53854800-53866600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
3	chr10:53856400-53866200	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr10:53859600-53860000	Enhancers	Fetal Muscle Leg	muscle
5	chr10:53859800-53860000	Enhancers	Aorta	Aorta
6	chr10:53859800-53860200	Enhancers	Sigmoid Colon	Sigmoid Colon

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