Variant report

Variant	rs12782626
Chromosome Location	chr10:96381651-96381652
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs34156870	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv497859	chr10:96058024-97027747	Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
2	nsv517681	chr10:96343228-96387079	Weak transcription Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:96359200-96382000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr10:96370000-96382800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr10:96370200-96382000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr10:96370600-96382000	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr10:96370600-96382000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr10:96372600-96382000	Weak transcription	H1 Cell Line	embryonic stem cell
7	chr10:96372600-96382200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr10:96372600-96382400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
9	chr10:96372800-96382000	Weak transcription	HUES6 Cell Line	embryonic stem cell
10	chr10:96373200-96382400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr10:96373200-96383800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr10:96374000-96382200	Weak transcription	HUES48 Cell Line	embryonic stem cell
13	chr10:96374600-96382000	Weak transcription	HUES64 Cell Line	embryonic stem cell
14	chr10:96374600-96386200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr10:96377400-96382000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
16	chr10:96378000-96382000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr10:96379200-96381800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
18	chr10:96379200-96382000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
19	chr10:96381600-96382800	Enhancers	iPS-20b Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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