Variant report

Variant	rs12785219
Chromosome Location	chr10:26179605-26179606
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:26178024..26180350-chr10:26180527..26183342,2	MCF-7	breast:

Extended variants
information (count: 82 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:80)

rs_ID	r²[population]
rs1075611	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11014812	0.80[EUR][1000 genomes]
rs11014832	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11014833	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11014837	0.88[EUR][1000 genomes]
rs11014839	0.88[EUR][1000 genomes]
rs11014840	0.88[EUR][1000 genomes]
rs11594081	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11596244	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11596246	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11596291	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12413819	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12415065	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12415073	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12415076	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12763779	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12764003	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12765882	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12766116	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12766157	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12766438	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12766618	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12766630	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12767158	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12783838	0.93[EUR][1000 genomes]
rs17745419	0.94[EUR][1000 genomes]
rs17745431	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17745449	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17745497	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs17745521	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs17745539	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs17745639	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs17813027	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17813033	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17813057	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17813069	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs17813093	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs17813099	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs17813111	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs17813147	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2014483	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs34003574	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs34041877	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs34084425	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs34131502	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs34233765	0.86[EUR][1000 genomes]
rs34393388	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs34397260	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs34482812	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs34527620	0.85[EUR][1000 genomes]
rs34610428	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs34613665	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs34697018	0.87[EUR][1000 genomes]
rs34776712	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs34828805	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs35291419	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs35326670	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs35554988	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs35773819	0.84[EUR][1000 genomes]
rs35936738	0.87[EUR][1000 genomes]
rs35938978	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs35972702	0.85[EUR][1000 genomes]
rs3887832	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs61009371	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6482518	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs66751834	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs67808306	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs68073810	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7083239	0.88[EUR][1000 genomes]
rs71495490	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs71495491	0.85[EUR][1000 genomes]
rs71499369	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs71499370	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs731797	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs748602	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs748603	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7896978	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7897690	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7909123	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7913600	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894974	chr10:26028530-26322783	Weak transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1051756	chr10:26092320-26277478	Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:26176200-26180400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr10:26178800-26184800	Weak transcription	HUES48 Cell Line	embryonic stem cell

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