Variant report

Variant	rs12786416
Chromosome Location	chr11:108003600-108003601
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs11212525	0.81[AMR][1000 genomes]
rs12360727	0.87[AMR][1000 genomes]
rs12794010	0.81[AMR][1000 genomes]
rs1519073	0.86[AMR][1000 genomes]
rs1550609	0.86[AMR][1000 genomes]
rs34971817	0.87[AMR][1000 genomes]
rs7931681	0.82[AFR][1000 genomes];0.87[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533794	chr11:107349817-108093259	Bivalent Enhancer Weak transcription ZNF genes & repeats Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
2	esv3372573	chr11:107880365-108022895	Weak transcription Strong transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
3	nsv1039549	chr11:107950572-108034548	Weak transcription Strong transcription Enhancers Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
4	nsv1040522	chr11:107969357-108049672	Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Enhancers Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:107993200-108013200	Weak transcription	Fetal Thymus	thymus
2	chr11:107993200-108018600	Weak transcription	Thymus	Thymus
3	chr11:107993200-108021800	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr11:107993200-108030000	Weak transcription	Placenta Amnion	Placenta Amnion
5	chr11:107993200-108069600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr11:107993400-108004000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr11:107993400-108004200	Weak transcription	Primary T cells from cord blood	blood
8	chr11:107993400-108006000	Weak transcription	HUES48 Cell Line	embryonic stem cell
9	chr11:107993400-108009600	Weak transcription	Colonic Mucosa	Colon
10	chr11:107993400-108011200	Weak transcription	Esophagus	oesophagus
11	chr11:107993400-108012600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr11:107993400-108013200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr11:107993400-108014000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
14	chr11:107993400-108017800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
15	chr11:107993600-108004000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
16	chr11:107993600-108004600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
17	chr11:107993600-108005800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
18	chr11:107993600-108005800	Weak transcription	NH-A	brain
19	chr11:107993600-108006600	Weak transcription	HMEC	breast
20	chr11:107993600-108006800	Weak transcription	HSMMtube	muscle
21	chr11:107993600-108013200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
22	chr11:107993600-108018800	Weak transcription	Fetal Kidney	kidney
23	chr11:107993800-108010800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
24	chr11:107994000-108029600	Weak transcription	Fetal Brain Male	brain
25	chr11:107994200-108005800	Weak transcription	Cortex derived primary cultured neurospheres	brain
26	chr11:107994400-108003800	Weak transcription	Fetal Intestine Large	intestine
27	chr11:107994600-108009400	Weak transcription	Fetal Brain Female	brain
28	chr11:107994600-108013800	Weak transcription	H1 Cell Line	embryonic stem cell
29	chr11:107994800-108009400	Weak transcription	Muscle Satellite Cultured Cells	--
30	chr11:107994800-108011600	Weak transcription	Fetal Intestine Small	intestine
31	chr11:107995000-108003800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
32	chr11:107995000-108004000	Weak transcription	Primary hematopoietic stem cells	blood
33	chr11:107995000-108004000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
34	chr11:107995000-108004000	Weak transcription	NHDF-Ad	bronchial
35	chr11:107995000-108004200	Weak transcription	HUVEC	blood vessel
36	chr11:107995000-108005800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
37	chr11:107995000-108005800	Weak transcription	NHLF	lung
38	chr11:107995000-108018600	Weak transcription	Hela-S3	cervix
39	chr11:107995200-108010800	Weak transcription	Brain Germinal Matrix	brain
40	chr11:107995200-108011200	Weak transcription	Primary B cells from cord blood	blood
41	chr11:107995200-108011400	Weak transcription	Aorta	Aorta
42	chr11:107995400-108005800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
43	chr11:107995400-108011200	Weak transcription	Lung	lung
44	chr11:107995400-108011200	Weak transcription	Spleen	Spleen
45	chr11:107995400-108011600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
46	chr11:107995400-108013000	Weak transcription	Dnd41	blood
47	chr11:107995400-108013200	Weak transcription	Gastric	stomach
48	chr11:107995600-108004000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
49	chr11:107995600-108004000	Weak transcription	Duodenum Smooth Muscle	Duodenum
50	chr11:107995600-108004200	Weak transcription	Rectal Mucosa Donor 31	rectum

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