Variant report

Variant	rs12787237
Chromosome Location	chr11:6120657-6120658
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 116 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:91)

rs_ID	r²[population]
rs1038006	0.83[ASN][1000 genomes]
rs10431012	0.83[ASN][1000 genomes]
rs10769656	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10769657	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10769658	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10769659	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10769667	0.83[ASN][1000 genomes]
rs10769668	0.83[ASN][1000 genomes]
rs10839477	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10839478	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10839479	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10839489	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10839491	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10839509	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10839510	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10839512	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10839513	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10839514	0.81[ASN][1000 genomes]
rs10839515	0.81[ASN][1000 genomes]
rs10839516	0.80[ASN][1000 genomes]
rs11040594	0.80[ASN][1000 genomes]
rs11040648	0.80[ASN][1000 genomes]
rs11040649	0.80[ASN][1000 genomes]
rs11040650	0.80[ASN][1000 genomes]
rs11040652	0.80[ASN][1000 genomes]
rs11040653	0.80[ASN][1000 genomes]
rs11040709	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11040713	0.80[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11040714	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11040715	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11040717	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11040718	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11040741	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11040760	0.83[ASN][1000 genomes]
rs11040761	0.83[ASN][1000 genomes]
rs11511999	0.81[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs12360715	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12803982	0.82[AFR][1000 genomes];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12806233	0.81[AFR][1000 genomes];0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1462982	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1462983	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1599689	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1599690	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1841821	0.83[ASN][1000 genomes]
rs1961065	0.83[ASN][1000 genomes]
rs1964539	0.83[ASN][1000 genomes]
rs2344356	0.83[ASN][1000 genomes]
rs34481020	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs35349232	0.80[EUR][1000 genomes]
rs35829351	0.81[AFR][1000 genomes];0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4362124	0.80[ASN][1000 genomes]
rs4604856	0.80[ASN][1000 genomes]
rs4758077	0.80[ASN][1000 genomes]
rs4758079	0.80[ASN][1000 genomes]
rs4758080	0.80[ASN][1000 genomes]
rs4758379	0.80[ASN][1000 genomes]
rs4758384	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4758385	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4758386	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4758391	0.83[ASN][1000 genomes]
rs5005636	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs5005637	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs5005639	0.82[AMR][1000 genomes]
rs5005640	0.81[AMR][1000 genomes]
rs5005643	0.81[AMR][1000 genomes]
rs5005644	0.81[AMR][1000 genomes]
rs6578736	0.80[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6578737	0.80[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7104448	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7106139	0.80[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7106179	0.80[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7111479	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7114613	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7114866	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7117092	0.80[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7117349	0.80[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7122336	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7122340	0.81[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs7123409	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7929863	0.81[AFR][1000 genomes]
rs7929888	0.80[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7932413	0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7932884	0.80[ASN][1000 genomes]
rs7935717	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7935845	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7941058	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7943059	0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7943285	0.81[AFR][1000 genomes];0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7946421	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7952121	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7952132	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:25 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv553241	chr11:5506034-6203685	Genic enhancers Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	74 gene(s)	inside rSNPs	diseases
2	nsv530216	chr11:5614439-6468232	Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Enhancers Bivalent Enhancer Weak transcription Strong transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
3	nsv1036389	chr11:5695451-6177680	Weak transcription Bivalent Enhancer Genic enhancers Flanking Active TSS Active TSS Enhancers Bivalent/Poised TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	55 gene(s)	inside rSNPs	diseases
4	nsv540943	chr11:5695451-6177680	Strong transcription Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	55 gene(s)	inside rSNPs	diseases
5	esv10302	chr11:6104402-6121639	Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Weak transcription	n/a	n/a	inside rSNPs	diseases
6	esv9953	chr11:6114243-6122520	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer	n/a	n/a	inside rSNPs	n/a
7	nsv553355	chr11:6116038-6120686	Enhancers Weak transcription Bivalent Enhancer	n/a	n/a	inside rSNPs	n/a
8	nsv553356	chr11:6116038-6121077	Enhancers Weak transcription Bivalent Enhancer	n/a	n/a	inside rSNPs	n/a
9	nsv553357	chr11:6116038-6121432	Enhancers Bivalent Enhancer Weak transcription	n/a	n/a	inside rSNPs	n/a
10	nsv553358	chr11:6116038-6121550	Bivalent Enhancer Enhancers Weak transcription	n/a	n/a	inside rSNPs	n/a
11	nsv553359	chr11:6116105-6120686	Enhancers Bivalent Enhancer Weak transcription	n/a	n/a	inside rSNPs	n/a
12	nsv553360	chr11:6116294-6120686	Enhancers Bivalent Enhancer Weak transcription	n/a	n/a	inside rSNPs	n/a
13	nsv553361	chr11:6116294-6121077	Enhancers Weak transcription Bivalent Enhancer	n/a	n/a	inside rSNPs	n/a
14	nsv553362	chr11:6116776-6121006	Enhancers Weak transcription Bivalent Enhancer	n/a	n/a	inside rSNPs	n/a
15	nsv553363	chr11:6116776-6121432	Enhancers Bivalent Enhancer Weak transcription	n/a	n/a	inside rSNPs	n/a
16	nsv553364	chr11:6116776-6121496	Enhancers Bivalent Enhancer Weak transcription	n/a	n/a	inside rSNPs	n/a
17	esv1823542	chr11:6116776-6121550	Enhancers Bivalent Enhancer Weak transcription	n/a	n/a	inside rSNPs	n/a
18	nsv553365	chr11:6116776-6121550	Enhancers Bivalent Enhancer Weak transcription	n/a	n/a	inside rSNPs	n/a
19	nsv553366	chr11:6116776-6125660	Enhancers Bivalent Enhancer Weak transcription	TF binding region	1 gene(s)	inside rSNPs	n/a
20	nsv553367	chr11:6116974-6121077	Enhancers Weak transcription Bivalent Enhancer	n/a	n/a	inside rSNPs	n/a
21	nsv553368	chr11:6116974-6121432	Enhancers Weak transcription Bivalent Enhancer	n/a	n/a	inside rSNPs	n/a
22	nsv553369	chr11:6116974-6121550	Enhancers Weak transcription Bivalent Enhancer	n/a	n/a	inside rSNPs	n/a
23	esv1796383	chr11:6117526-6121550	Enhancers Bivalent Enhancer	n/a	n/a	inside rSNPs	n/a
24	esv1800766	chr11:6117526-6121550	Bivalent Enhancer Enhancers	n/a	n/a	inside rSNPs	n/a
25	esv1830284	chr11:6117526-6121550	Enhancers Bivalent Enhancer	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:6120400-6122000	Enhancers	Primary T cells from cord blood	blood

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