Variant report

Variant	rs12789312
Chromosome Location	chr11:108947823-108947824
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10502107	0.80[ASN][1000 genomes]
rs12785289	0.80[ASN][1000 genomes]
rs12805141	0.80[ASN][1000 genomes]
rs12807443	0.80[ASN][1000 genomes]
rs17705117	0.80[ASN][1000 genomes]
rs34883645	0.80[ASN][1000 genomes]
rs35567062	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35713822	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71475111	0.80[ASN][1000 genomes]
rs71475113	0.80[ASN][1000 genomes]
rs71475116	0.80[ASN][1000 genomes]
rs71475121	0.89[EUR][1000 genomes]
rs71475123	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1040650	chr11:108859584-109174553	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv898390	chr11:108893765-109003536	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	esv1815918	chr11:108900487-108948487	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:108944400-108948000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr11:108946600-108948600	Enhancers	Fetal Muscle Leg	muscle
3	chr11:108946800-108948000	Enhancers	Adipose Nuclei	Adipose
4	chr11:108946800-108948200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr11:108946800-108948200	Enhancers	Fetal Heart	heart
6	chr11:108947000-108948200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr11:108947200-108948200	Enhancers	Skeletal Muscle Male	skeletal muscle
8	chr11:108947400-108948600	Enhancers	Fetal Thymus	thymus
9	chr11:108947600-108948400	Enhancers	ES-I3 Cell Line	embryonic stem cell
10	chr11:108947600-108948600	Enhancers	Skeletal Muscle Female	skeletal muscle
11	chr11:108947800-108948000	Enhancers	Right Ventricle	heart
12	chr11:108947800-108948400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr11:108947800-108948400	Enhancers	Thymus	Thymus

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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