Variant report

Variant	rs12792753
Chromosome Location	chr11:92668975-92668976
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10741452	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10765573	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10830957	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10830958	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10830960	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11020107	0.87[CEU][hapmap];0.93[GIH][hapmap];0.86[TSI][hapmap]
rs11020114	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11523890	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2121647	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2121651	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs3847554	0.84[CEU][hapmap];0.83[MEX][hapmap]
rs6483206	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7936247	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043861	chr11:92357570-92689868	Strong transcription Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv1044571	chr11:92495213-92742314	Enhancers Flanking Bivalent TSS/Enh Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv555903	chr11:92640787-92877533	Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv555904	chr11:92640787-92881933	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs12792753	KIAA1731	cis	cerebellum	SCAN

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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