Variant report

Variant	rs12792927
Chromosome Location	chr11:127639147-127639148
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10893737	0.88[ASN][1000 genomes]
rs10893738	0.88[ASN][1000 genomes]
rs10893740	0.88[ASN][1000 genomes]
rs10893742	0.89[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs10893743	0.89[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs11221039	0.86[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs11221040	0.90[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs11533190	0.83[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs11533191	0.85[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs11559535	0.85[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs11602267	0.88[ASN][1000 genomes]
rs34256050	0.90[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs34544268	0.86[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs34718654	0.83[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs4259838	0.88[ASN][1000 genomes]
rs4278521	0.90[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs4393324	0.86[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs4459319	0.88[ASN][1000 genomes]
rs4471435	0.89[ASN][1000 genomes]
rs4491246	0.88[ASN][1000 genomes]
rs4497421	0.88[ASN][1000 genomes]
rs56340333	0.89[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs60649991	0.89[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs6590278	0.88[ASN][1000 genomes]
rs7938926	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:14 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898445	chr11:127377733-127713173	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv1037485	chr11:127582314-128301106	Enhancers Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	esv3467175	chr11:127622433-127656116	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
4	esv3467197	chr11:127622467-127656115	Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
5	esv3467186	chr11:127622501-127656078	Active TSS Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
6	esv3467208	chr11:127622501-127656078	Active TSS Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
7	esv1816529	chr11:127623438-127655008	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
8	esv1819125	chr11:127623438-127656815	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
9	esv1818193	chr11:127623438-127663921	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
10	esv1818616	chr11:127625130-127653770	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
11	esv1822544	chr11:127631883-127658538	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	n/a	n/a	inside rSNPs	diseases
12	esv1820570	chr11:127634121-127653948	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
13	esv1816272	chr11:127634133-127653960	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
14	esv1817427	chr11:127634133-127653960	Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:127637000-127639800	Weak transcription	H1 Cell Line	embryonic stem cell
2	chr11:127637800-127644800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
3	chr11:127638200-127639800	Enhancers	iPS-15b Cell Line	embryonic stem cell
4	chr11:127638200-127640000	Enhancers	HUES6 Cell Line	embryonic stem cell
5	chr11:127638200-127640400	Enhancers	iPS-20b Cell Line	embryonic stem cell
6	chr11:127638600-127641200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr11:127638800-127639600	Weak transcription	HUES48 Cell Line	embryonic stem cell
8	chr11:127638800-127639600	Weak transcription	HUES64 Cell Line	embryonic stem cell
9	chr11:127638800-127641200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr11:127639000-127640400	Enhancers	ES-I3 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links