Variant report

Variant	rs12793670
Chromosome Location	chr11:106888293-106888294
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531938	chr11:106760733-107156814	Enhancers Bivalent/Poised TSS Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	esv3378270	chr11:106887267-106890115	Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers ZNF genes & repeats Weak transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	esv3390031	chr11:106887567-106891165	Bivalent/Poised TSS Active TSS Weak transcription Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:96 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:106885800-106890000	Active TSS	Brain Anterior Caudate	brain
2	chr11:106886400-106889400	Active TSS	Fetal Adrenal Gland	Adrenal Gland
3	chr11:106886400-106889600	Bivalent/Poised TSS	Left Ventricle	heart
4	chr11:106886400-106890000	Active TSS	Brain Hippocampus Middle	brain
5	chr11:106886400-106890000	Active TSS	Brain Inferior Temporal Lobe	brain
6	chr11:106886400-106890000	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
7	chr11:106886800-106888400	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr11:106886800-106888400	Flanking Active TSS	Fetal Lung	lung
9	chr11:106886800-106888400	Active TSS	Right Ventricle	heart
10	chr11:106886800-106889000	Active TSS	Fetal Muscle Trunk	muscle
11	chr11:106886800-106890000	Active TSS	Brain Angular Gyrus	brain
12	chr11:106887000-106888400	Bivalent/Poised TSS	Skeletal Muscle Female	skeletal muscle
13	chr11:106887200-106889200	Bivalent/Poised TSS	Skeletal Muscle Male	skeletal muscle
14	chr11:106887400-106890400	Active TSS	Brain Substantia Nigra	brain
15	chr11:106887600-106889400	Active TSS	Fetal Intestine Small	intestine
16	chr11:106887800-106888400	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
17	chr11:106887800-106889200	Active TSS	H1 Cell Line	embryonic stem cell
18	chr11:106887800-106889600	Active TSS	H9 Cell Line	embryonic stem cell
19	chr11:106887800-106889600	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
20	chr11:106887800-106889600	Active TSS	Fetal Brain Female	brain
21	chr11:106887800-106890000	Active TSS	Ovary	ovary
22	chr11:106887800-106890400	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
23	chr11:106888000-106888400	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
24	chr11:106888000-106888400	Flanking Active TSS	Brain Germinal Matrix	brain
25	chr11:106888000-106888400	Bivalent Enhancer	Colon Smooth Muscle	Colon
26	chr11:106888000-106888400	Flanking Bivalent TSS/Enh	Duodenum Smooth Muscle	Duodenum
27	chr11:106888000-106888400	Flanking Active TSS	Fetal Brain Male	brain
28	chr11:106888000-106888400	Flanking Bivalent TSS/Enh	Fetal Muscle Leg	muscle
29	chr11:106888000-106888400	Flanking Active TSS	Placenta	Placenta
30	chr11:106888000-106888400	Flanking Active TSS	Pancreas	Pancrea
31	chr11:106888000-106888400	Flanking Bivalent TSS/Enh	Stomach Smooth Muscle	stomach
32	chr11:106888000-106888400	Flanking Active TSS	NH-A	brain
33	chr11:106888000-106888600	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin02	Skin
34	chr11:106888000-106888600	Bivalent Enhancer	Liver	Liver
35	chr11:106888000-106888600	Bivalent/Poised TSS	Duodenum Mucosa	Duodenum
36	chr11:106888000-106888800	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin01	Skin
37	chr11:106888000-106889000	Bivalent/Poised TSS	HUVEC	blood vessel
38	chr11:106888000-106889400	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
39	chr11:106888000-106889400	Active TSS	HUES48 Cell Line	embryonic stem cell
40	chr11:106888000-106889400	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
41	chr11:106888000-106889400	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
42	chr11:106888000-106889400	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
43	chr11:106888000-106889400	Active TSS	Fetal Intestine Large	intestine
44	chr11:106888000-106889400	Active TSS	Rectal Smooth Muscle	rectum
45	chr11:106888000-106889600	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
46	chr11:106888200-106888400	Flanking Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
47	chr11:106888200-106888400	Flanking Bivalent TSS/Enh	Breast Myoepithelial Primary Cells	Breast
48	chr11:106888200-106888400	Bivalent Enhancer	Primary B cells from peripheral blood	blood
49	chr11:106888200-106888400	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
50	chr11:106888200-106888400	Bivalent Enhancer	Primary hematopoietic stem cells	blood

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