Variant report

Variant	rs12796815
Chromosome Location	chr11:83895886-83895887
allele	A/C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs11820047	0.81[EUR][1000 genomes]
rs12785630	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12787368	0.81[EUR][1000 genomes]
rs12789203	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12789747	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12791194	0.81[AFR][1000 genomes];0.94[AMR][1000 genomes]
rs12792995	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12793913	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12794331	0.81[EUR][1000 genomes]
rs12794445	0.81[EUR][1000 genomes]
rs12794827	0.81[EUR][1000 genomes]
rs12799079	0.81[EUR][1000 genomes]
rs12799887	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12799958	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12800271	0.81[EUR][1000 genomes]
rs12800335	0.81[EUR][1000 genomes]
rs12807260	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12808441	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2168008	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2187554	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs34041407	0.81[EUR][1000 genomes]
rs34042104	0.81[EUR][1000 genomes]
rs34263119	0.81[EUR][1000 genomes]
rs34317629	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs34450319	0.81[EUR][1000 genomes]
rs34455483	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs34671961	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs34805036	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs34948958	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs35045635	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs35046352	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs35132821	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs35193038	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs35286030	0.81[EUR][1000 genomes]
rs35502448	0.81[EUR][1000 genomes]
rs35503301	0.81[EUR][1000 genomes]
rs35618512	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs35710671	0.81[EUR][1000 genomes]
rs35758479	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs35906479	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs35932053	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs36142496	0.81[AFR][1000 genomes];0.94[AMR][1000 genomes]
rs36144059	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs36170215	0.81[AFR][1000 genomes];0.94[AMR][1000 genomes]
rs36193332	0.81[AFR][1000 genomes];0.94[AMR][1000 genomes]
rs36193948	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs57290534	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs58482751	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs58827106	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs66534956	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs67084495	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs67595444	0.81[EUR][1000 genomes]
rs67735822	0.81[EUR][1000 genomes]
rs71469634	0.94[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs73517787	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1039924	chr11:83662904-83993497	Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv541102	chr11:83662904-83993497	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv898029	chr11:83717887-83939591	Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:83889800-83900400	Weak transcription	H1 Cell Line	embryonic stem cell

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